Chr:
Chr5
Start:
35605
End:
38345
Strand:
-
Ref_name:
OSA-LNCN4902
Sequence
(OSA-LNCN4902.1):
CCUAACCAUUCCUUUUUUCUCCGUUUUUCGAAUUUUUUUUGGCUAUCUCGUUGCUUUACACGUUGACUGCUCGUAAGCUGUAACCGGUCAAACGAAAUUUUGGGCGUUGUGGGGGUCUUGCAAAAAACUCGUGUUUACACAUAAUAUCACAUAUACCUGACAUCACGUUGUAUUUAUUACGUAUAACCUCUUGUAUUCCAUGAAAAAUACAAAAAUUCCGCUUCCAGAGGUAGCGUUGUAAACGUAAAAGCCAUAGGGGGUUUUCUGCAAAACGUCCUACACUAAACCCCCCUUCCCAUCCCACCUCUCAUCUCUCGGCGCGGAUUCGACCGAAGGCCUGUGGCGGCAGCGGCUCUAGGCUAUGGCUACGCGAAGGGUGGAUCCAGCGGCGGCUCCCCUCCCUCCUCCCAAAUCCAGCGGAGGUGGAGGGCGGAGGCGGCUUGGAGGGUGGACGAGCGGCGGCUCUGUCGGGAGGGGGGAGGGAGGUGGCAGCGGCGGCCCUCCCCUCCCGAUCUGGCGCGGUGGCUACGCCCGCGGCUAGAUCUAACGCCGCCGUCGGAUCUGGCGAUUGGAGAAGACGGCGCGACGGAGGAGGAUGACCACCAUAGGCGCUAGCGACGGAGCGGCGGAGGCCAACGGGUGCGGCACCAUCUUCUCCUUCAUUGUCCGCCGCCCUUGCACGGGACGUCGCGUGCACCCCUCCCCUCUUCUCCUUCCCCUCGCGGCGGCAUCGGAGCCGGCGCCCACUGCCCUCUACCCCUUUUUCUCCCUUCCCUGGCGGCGACGUUAGGUCGGGUGGCGGUGUCGGAGCCGGCGCCGGUGUCCUCCCCGCUCUUCUCUCUCUGCUCACGGCGGCGUCGGGGUGGGUGGCGCGCCGGAGCCGACGCCGGUGGCCCCGGUCUACUUUGAGUGCUCCGUCGACGUCGUGUCCUACAACGGCGCUGCCUACGCCGUCAUGCUGGUAUUGCAUAUCUACAAUAUUGUUGGUGCUCAAACCAGGCUGCUUUAGUUCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUUGCUACAAUUUGAAUUCAAGACGUCGCCUCUCACAUCUACCUCAACUGAACAGAUAUCUGCAAGGGACACCUGACAACAGCAUGGCCAGCUUCGCUUCCCAAGCCACUGAUCAUACUGCUGAGCAAAUUGAAAACACAGGACCCUUUAUCCUAAAAUUCAUAGUGUUUUAUAUCACUCAAAUCAAAUAAUUCAUCAUAUACAUAAACAUCCUAAAAUCCGCAGGCCCUAAUCCAAAAAACAAUUCAAUCGAAAGCAGAAGCCAUGCCCAAGAACCGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
16.46%
HE_num:
HEP:
83.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.63
Avg Expression:
22.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.34993528285913 | 1.33911977990184e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.35410745609852 | 1.8092228826374e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.59619487184792 | 0.00030349988287392 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.13830864368416 | 0.00636513080858362 |
| 5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.02448716419216 | 0.000606818168828541 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.82866065843936 | 3.2718150831531e-06 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.12822221692329 | 0.000211541022081874 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.67791415248984 | 4.04538626452508e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.74872299381766 | 4.61410200286415e-07 |