Chr:
Chr4
Start:
35273465
End:
35275192
Strand:
-
Ref_name:
OSA-LNCN4898
Sequence
(OSA-LNCN4898.1):
AACAUGAUUAUCCACCAUAAUGCAGGUAAACAAGCAAUGCCAGCUCAAGCCAGAAGAAAGCAGAUGGAAAAAACAUAGUACUCCGUCCGUUUCAUAUUAUAAGUCACUUUGACUUUUUUCUUAGUCAAACUUAUUUAAGUUUGACCAAAUUCAUAGAAAAAUUUAGCAACAUCUAUAACACCAAACUAGUUUUAUUGAAACUAAAAUUUAAUAUAUUUUGAUGGUUUGUUUUAUGUUGAAAAUGUUGCUAUAUAUUUCUAUAAACUUGGUUAAACUUAAAGAAGUUUGACUAAGAAAAAAGUCAUAUCGACUUAUAAUAUGAAACGGACGGAAUAACACAUUGGGAGUUACCAGUCCGAAGCAACGUUCUACAGUCCAAAACAAGUUCAGAACUUCAAAUGCCUCAGCUUGAGUAAAGUUGGCUAUGUGUAAUUAGUCAAUGAUACCCUCUCUCGACACGAUGGGCUUAGGGCAGAAGUGCAAAAGCUAAUUUGUGAAAUGCAAAGAAAGCACCAUAAUUCCAGACCACUGAAGAUUUCUUUAGUAGCAAAUGGUCCACAAAAAAAAAAGGUCAACCAUGUCAAAUUGACAAGUUAUAUACAGCAGGACCACAUACAAAAGUCAGAACAAUAUUUAUUGGUCAGUAGUUUUAUACUCGUCACAAUAUUUCCCAUGCAAACAAGAAUGGCUGCUCGUCACAAUAUUUCCCAUGCAAACAAGAAUGGCUGAUCCUCCUACAUGCUACUGUAGCAGUGGCUCACCUAGAAAUUGAGCCCAGGAGGGGGCAAAAUGCUAUCACGUUCUUCUACACGAAAUAAUGUACUCCCUCCAUUCCAAAAUAUAAGAACUUCUAGCAUUUGAAUCUUGUUAAAAAAAUCUAAGGAUUUCUAGCACUAUGCACAGUACUACUUGUCCCAUUAAUCACAUCCCAUUCAAUUUUUUCCCAUAUUACCCCCUCCUAUCCAUAUUUAUUGAGGGGCGCUAAAGUCUUUUCUUCUCAAUCUUAAUCUCCACUAAACAACCUAGAAAUCCUUAUAAGAGGGAGUACAUUAUUAGAUCAAAUUGCAAAAUAGGACUUUCAGACAGGGGCAAUCUCUAAAAAAUGGAUUUGAUGUCUUCUCAAACUUUAGUACCAGUAUUUGAGAAACUAAAACUUCAGUAGACUUCUAUCUUGUUGAGACCAGAAGAGGAGGCAAGAGAUGUGUGUUUCUCGCGCUGAUUCAAUAAUAACUUUUUUUUCUCAUGAGAAAUUCCGUUGUGAUUUCUCACCUAGUAUCUCAUGAAGUGCACUUUUCAUCUAGAUGUUGUAGCAGCUUUAAUAUGUGCACUUCACUGGAAUCAAAUAAUGUCAUUAACCUAGGCCCAAAAGGUAAAGCAACAAAAUUUGAGCACAGAUCUAGUGUUAAGUAAAACAACAGUUAAAAACUGCAGGUGCUAGAGCAGUGUUGAACUGUAGAGACCCAACUUGAUGUAUGCUUGCUCAAUGGUGCAUUUCUCAUGUUUUGACUAAACUACACAAAAGGACAUUCAUAAGGCCAAGGAAGCAGAUUCAUUAACUAAAGCAAACAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.46%
ME_num:
MEP:
41.87%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.69
Avg Expression:
3.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.32192619921977 | 1.35653280347373e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.19881474570439 | 0.0145410594110267 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.12687920596155 | 0.000341418617188119 |
| 4 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.18220996321986 | 0.0136822824830089 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.42917257138237 | 0.0169140433869238 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.45512962042292 | 0.0149154574151662 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.09212709902793 | 0.000224605405611654 |