Chr:
Chr4
Start:
34976876
End:
34977225
Strand:
-
Ref_name:
OSA-LNCN4892
Sequence
(OSA-LNCN4892.1):
GUGUAAUCAGAAUUCAGAACCCACAGGUUUAAAUUGUAAUUGAAUUGUGUUUUCAGGUGAAAUUCAGUAACCUUCCAGUGAAACAAUCACAUCAUUACAACCUAAUGAACCUAUUGAAAUCACUUCAGCAUUAGAAUGUCUAUCUGUUUGAAACUGAAGAUCUUUCCUGGCAAAAUUCAGACACUAGCGUGCAGGCAGCAAUAUGAUUCAAACAUCCUUCGGUCCUUCCUGCGUAUCAAAGGAAUCAUGACAUGCAGGAAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.54%
ME_num:
MEP:
51.83%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.59
Avg Expression:
1.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.13328776372034 | 0.0295599701073296 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.08015438928711 | 0.0435749445037111 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.30371729934256 | 0.000273685027259465 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.59571017871928 | 0.00511657667166513 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.79374302758667 | 0.0270260530867518 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.79385975742604 | 0.0272243470625336 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.79394411308983 | 0.0270576998578129 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.11416525674458 | 0.0459272162986602 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.82266770299353 | 0.00295363125267566 |