Chr:
Chr4
Start:
34970160
End:
34971840
Strand:
-
Ref_name:
OSA-LNCN4891
Sequence
(OSA-LNCN4891.1):
GGGAGAAUGAGUGUGGUGCGCCUCCAUCUCAUCCGACACCGCUAUAUAUAAGUGCUGUGCUGUGCCAUUGGGAAGGCAUGCCAUGUCAUGCAUAUAUGCAUGCAUGGCGCCUUGACUUGAAUGCUACAACAGCUAACUCCCUUUAAUUAGGAGUACAGUAUUUUGCAAAACAUAUUUACAGGUGGCUAGAGAUCAUCACAUCCUGUAUAUAGUUACGUUGAUAGAACCCCUUUACUGACAAUCAUAUACUAACCAUUGAUAUCUCACAGACACUUCUGUCCAAUGGAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.82%
ME_num:
MEP:
34.76%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.24231874801885 | 0.0135654733035176 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.99277745100845 | 0.00570919494050408 |