Chr:
Chr4
Start:
34956328
End:
34957116
Strand:
-
Ref_name:
OSA-LNCN4889
Sequence
(OSA-LNCN4889.1):
ACCAUUCAACAAAUCUAUAUAUCCAUAAUGCGAUUAUAUUAGGUCAUUAGGGGCUUAGGAAACAAGACACAGUAGUACAGUACGUGACAGGCUCACAGCCACAAGCUAAAAGUAGUACAGUACGUCAGACAGCCACAUGCCAAAAUAUCACCAAUUCUUCAUAACGGAGACUUAUAGUCAUUACAGUCACAGUCACAGGCUCACAGCCACAUAGUACUCCAGUACAUAAUACCAUAAUACUCAGAAACAUGUCUUGCCAAAUGCCAACCAGGAAACAUCACCAUUUCACAAGAGUCUUGAGCCAACCAGAAAACACAAACCAUUUCACGUAAACCAUAUUUAAGGACAAGACACUCAAAUCAUCAGUAGGAGACGACGACUGGCGCACACGGCUGUCACGGCAGGCCUGCACACGGCAGGACGGCACGACGGAGAUGGCAACCGACGCAGGCCGUGCAGCAACGGUGGUGACGAGCACCGUGGGAGCCGGCGCGGUGACGGAGCGGCGCCGCCGGCGUGGGUGGCGCUGCUGGCAGCCGUCGCAAGGGCGCGGCCGCGGCAGGAGCCAGGAGGAGACGCCGUCGCCGAGAGCCCGUGACGGCAGGAGCCAGGAGCCGCCGCCGCCGCCCAGGAAUAGGAACAGACGAACAAUCACUCCACUCGGUCUCCUCAUCUCUCUCCUAUUUCCUCGGGUUAACAAUACUAUUGGGCCGGUGAGUUUUGGGCCUGAGUUGUUGGCUUUUUGGCUAGCUUGCCUCAAAUCUGGUUGGUUGGUUGUACAGACUACGU
Sequence
(OSA-LNCN4889.2):
ACCAUUCAACAAAUCUAUAUAUCCAUAAUGCGAUUAUAUUAGGUCAUUAGGGGCUUAGGAAACAAGACACAGUAGUACAGUACGUGACAGGCUCACAGCCACAUAGUACUCCAGUACAUAAUACCAUAAUACUCAGAAACAUGUCUUGCCAAAUGCCAACCAGGAAACAUCACCAUUUCACAAGAGUCUUGAGCCAACCAGAAAACACAAACCAUUUCACGUAAACCAUAUUUAAGGACAAGACACUCAAAUCAUCAGUAGGAGACGACGACUGGCGCACACGGCUGUCACGGCAGGCCUGCACACGGCAGGACGGCACGACGGAGAUGGCAACCGACGCAGGCCGUGCAGCAACGGUGGUGACGAGCACCGUGGGAGCCGGCGCGGUGACGGAGCGGCGCCGCCGGCGUGGGUGGCGCUGCUGGCAGCCGUCGCAAGGGCGCGGCCGCGGCAGGAGCCAGGAGGAGACGCCGUCGCCGAGAGCCCGUGACGGCAGGAGCCAGGAGCCGCCGCCGCCGCCCAGGAAUAGGAACAGACGAACAAUCACUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.33%
ME_num:
MEP:
40.04%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
3.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.26220526988144 | 2.02513486483854e-06 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.13428908747127 | 0.0228150722575076 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.84625027636622 | 0.0458953701609154 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.89478227701113 | 0.0290426608058295 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.42093614704317 | 5.38646269101637e-06 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.3923827736741 | 0.0337787519728401 |