Chr:
Chr4
Start:
34649481
End:
34655316
Strand:
+
Ref_name:
OSA-LNCN4884
Sequence
(OSA-LNCN4884.1):
UACGAACUCCACGCGCGGGAUCCCAUGAAACGGGGACCGCGCGAUCUCCCGUUGGAUUUUCCCGGCCGCGUCCGUCCGCGCUCGCGGCUGCAGUUGAGCGAUCCAAUCCAAUCCCCCGUAACAACAACGCCGCGCCAAGCCAAGCCCGAGCACAACGCGGGGGGCUAUAGAAUCCCACGUCGCGUUGCUCGUGCGGCGCGGUGCACAACACCACCACCAGGUGGUUGAUGCGUCUCAAUUGAAGGAAUCCGAUGUGCAGUAGCAGCAGCAGCAGAAGCAGCAGCUAUCCCUGUCCGUCUUGUGCCUUGCCUCUCGCUCGGCUGCCUGUACUGAAACGCCGGCCGGGGUCGGUCGGUCGCGUGUUGCGAUCCUCGCGUUUACUGCUGAAAAUCAGCUAUCCGCAAGUACCCUGCACCGACACUUGCCACCCUAUAGCUAAGCUGAAAAUUUGCUCAGUUCCUCUGCUCCUACUACUCGUUUUAGCUCCAAUGCUGACUGCAACCUCUCCAGUACUUGCCUGCACACCAACUGCCCUUUACCUUUCAACGACCGUAACGUCCAGCCUCCAGCCUCGACGACGACAUAUGCUCAUCAAACCAAUCCCACAAUUCGUACUACUCGUCUACUCCUACUACUUGCUGAAGAGAGAUUGGGGGUAGCGAGGUCCUCCACAUGGGUCACGCACACGACAAUCAUCGGUCGUCGUCGCCGGGCAUGUGGCCAGGCGCGACAUCACGCAGCUCCAUCCAUCAUCUGUGAAGGAGAGGCCAGGAUGAUGGUGGCAUAAUUGUAUUACGCUUUGUGCAUUAUUGGUCCCCUACAAUGAUCUCCGGGACGUCUCCUCUGCGUGCCUUCCCCUAACCCCAUUACUGUUAUACUAGCUUUUCAGUUGCAAAGCUCGAUUAACUCUUCCAUUUGCUGCUAAGAUAUUUUUUCUGCCUUUAAAUUAGGUCCGGAUCAGGAUCACUAGCUAGUGUUUCGGUUUCACCGGCCGUGGUGGUGUUGCUGAAGCUGGGAAGUUGUAUACCUGUCGGUUGAGGCCGUUGGUCCUGCUGCCGGUUAACUUCGCUCAUCUAUACAGCAGCAGCGGAGGCAGAGCUGUCUGAAAACUCUUCGCUUAGACACAGUUUACAGGACAAGGACGCUUUGUCCGUGCGUUGUGCUAGAGCAGUGGAUGACAGGCUUCGAUCACCAAACACUCUUUCGACGGCAUAUAUUUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.94%
ME_num:
MEP:
78.25%
HE_num:
HEP:
12.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.70
Avg Expression:
10.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.53548485753441 | 0.045856192883849 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.80045233048385 | 0.0136674325452316 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.6162671856217 | 0.0247744425657249 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.46895496606404 | 0.0373432906950059 |