Chr:
Chr4
Start:
34433560
End:
34434190
Strand:
-
Ref_name:
OSA-LNCN4878
Sequence
(OSA-LNCN4878.1):
GAAAAGGACGCGGGAAACAGGAAGGAAAAGGCGGGGAGGAUGAACGGACGGAUCGGGGCCCCAGCCCGGUUCGUACUCCCGAUAGGAGGAAGAAAGAGCGGCGAAUUCACGCGAACCGGAUAGAUGGAUGGAUCAUGGAGGAAGAUGGGAUGAGCAUGAGGCGAGGCAGACAGGCAGGAGGAGCAUGUGGCAAUUGGUGAGUGAAUCUUUGCGCUGUAAAGACAAGCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
7.32%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.92
Avg Expression:
0.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.45247637231456 | 0.00036005792061415 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.05771165528217 | 0.000242398483245363 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.99760097707669 | 5.40571985640679e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.26518388891385 | 0.00196567896154082 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.11118722604863 | 0.00126572165342632 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.80233777013126 | 0.0249072524387431 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.11412031232898 | 2.6917077489209e-05 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.67507380791556 | 0.0465075779057195 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.14032521438662 | 0.000905623571248503 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.24900958318718 | 6.30790209236185e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.72463215973144 | 7.42739601136547e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.44522534220217 | 0.000356208264965208 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.85426357165468 | 2.28625584035704e-06 |