RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4877

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

34417115

End:

34418738

Strand:

+

Ref_name:

OSA-LNCN4877

Sequence
(OSA-LNCN4877.1):

GAAUUAAAGAAUUGUUUAGUUCCUUUUUGCGCGCGCUUUACCACGCUUGAGAGAAAGGCAGUGGAUGCGAUGGGAAACAGGAAGCACAAACAUGUAGGAGAGGAUUAAAGAAAGGCCAUUUGCACAUAGAAAGCACCGAAGCCAGGAUAAAGGCAAAAUCUGGGCAGACCGGGCACUUGUUAAAGCCUCCCUAGGUUUCAUUGCUGAUAAACAAAUUGGCGAGAUCUCAGUUGCAAAAAUGAUCGGUUGGCCAAGACGAAAUGGUCACCAAUGUGAUGGGCUAACGACAGUGUCAUGGAUCAAAAGUGAAACGCAGACAGGGAAAAAGGUUAAAGUUUACGUCUGCAUGCAUGCAAAUAAAGCUUGAACGACUAUGUCAGAAAAAAGCAGUUGUAUCUAUCCAAGGGUUGCCAACUCUGCAACUGUGAAGAAACAAAGGACCACAGUCCACAGAAAAAAAAAUGUGAUGCAGAAGUGCAGAAAUGCUGCAUGGAUUCCUGAGGUAAGUAUGUGAUCAAGACAUAGCGAGUUUCAGUAAGUUGAAAUUAUCAACUUAUGAUUUUGAAACAACUUAAAGUUAGCAUUUUUGUUGAAAUGGGAUCAGACUUCAGUGGAUAGGACUGGUAGGACAGAGGAAUGUAUGGUGGCCAAGUGACAAGGUUUCAGAUCUGACGAACGAAAAGCUCACACUGCACAGUGCAAAAGGGUUAAAGGCAAUGGAAUUAUGGAAAUUGGACAAAUGAAUUGUUCUACCCAUAACACAAAGUACUAGGCGAUCUCUCUGUCCAUCAUUAGCGUCCCAUGAUAGUACUAUCAAACUUUAUUCAGUCCUUUGUAAAAGACCAGGCAAGAACAGGCCAACACACAGGAAUUAUGCAGUGGCUAAGAAAAAAACAGUUCGAAACAAAGUUGUUGCAAAGAAAGAUUGGAAAGAUAUGCAGAGUCCUGGAGGAAUGGUAUAUCCAUGACAGAAGUUCCAAUCAAAGAAGCUGUAUUGAAGACAGAACUGACAAAAAUGUAAAUGUUGAAAUCAUAGCCAUUACGAAGGUGACCUUCAGGAACUCAUCAUGGCUCCAAUCAUAGCGUGAGAGAAUGCUCCUAUUCACUGUCAGUGUCAGGUGAAAUUCCCGGUGCCCUAAACUACCUACAAGUCUGUUUCUACCCAGUCAUGAUCAAUCAUUCACGAAGUCAGAAGCUCAGAGCAGAACAAGUAAACCUCAAAAUCCAGCUAAGGGGGUACAGAGAAAUACAGGAUUCACGUCGAAUUUUCCAAAAUGUAAAAUCUGGAUGCUUACUAGACGACCAAAAUGCCGUCUUGUCCCAUGCACAACGGUAAACUUUACCUUGGCAGGCAAAGAAUUUUACCACUGCUCCUACUAAUCCAAGACUAGACUGGUACUUUUUUUUUUGCCGGGACGGCCAAAGGAUGGCCGGCCAAUUUCAUUAAGAUAGGAGAAAAGACUAGACUGGUACUGCCCCUAUAAUUAGCCACUCAAUAGCAUCAAGCUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

322

LEP:

65.45%

ME_num:

163

MEP:

33.13%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.80

Avg Expression:

2.52

Tip: OSA-LNCN4877 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.435173500251784.35289977318446e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.198665920463241.22263521363302e-05