Chr:
Chr4
Start:
34349547
End:
34350515
Strand:
+
Ref_name:
OSA-LNCN4875
Sequence
(OSA-LNCN4875.1):
GAGAAAUUAAACUCAAAAGAACAUGGCUGAUACAAGCAAAAGAAAUGAGUAAACGAAUGUGAGCAGAAUACAGUGCAUGAGCUGCUAUACUAAUGCAAGCCAGUAAACAAAUAACCUGUUGGAGGAGCAAUGUAAGAGAAAACAAUGCAUGCAGCAACAGCUAAAUAUCAACUACAUGCAUCAUGGUGGCUAUUUCCAAAUUUUACGGGAGGCACAAAAGCUUUGUACAUUUUGGUAUUAACGGGAGUAAACAAACAAAGUAAACAAAGUAUCUAUUUCCAGUCUGAAACCACAAUGAACAGCUUUGUAUUAAGAAUAAAACAAACAAACAAAGUGUCUAUUUCAGCCAGGGCAGGUCAUUAUUAUGGCCUUAAAUGCUGUGUAUACUUGAUAUGCCUGUUGGAAUUGAUCGUUUGCUAGAACUUUAAAAGCUGUAUACUCCAAGUUACAAUACGGGUGUGUUUAGUUCACGCCAAAAUUGAAAGUUUGAUUGAAAUUGGAAUGAUAUGACGGAAAAGUUGGAAGUUUGUGUGUGUAGGGAAGUUUUGAUGUGAUGGAAAAGUUGGAAGUUUGAAGAAAAAGUUUGGGACUAAAGUCAGCCUACAUCUAGAAUGUAAUUGGCAGAUGGCAAAUUAUCACAUCAGUCACAAAAGGAAAUAAAGGAUUAUAAAAAGUAAAAUUAAAUAUAUGAAGCGCUUAAGCACCUCUAUCAAAAAGUCAAAAGAGCAAUGUGGUGAGGGUGCUAGGUGGUGUCAAUUUUGGUCUUCAGUGUACAUCUGACUUAAUUUUUAGCGAAGUUAAGAAGUUCUUCUACCCAAUUUGCACAUGACCAGAAUCAACAUAUAUGUUAACAAGGAAACAGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.58%
ME_num:
MEP:
65.04%
HE_num:
HEP:
11.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.65
Avg Expression:
4.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.20109404171302 | 0.0138448034794387 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.66139231061552 | 1.85728395731392e-05 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.17197955621383 | 0.00076515578891929 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.31665406003597 | 0.00435175667972657 |
5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.79837307365805 | 6.1694306955321e-12 |
6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.44871545667232 | 0.000217581480582499 |