Chr:
Chr4
Start:
34348371
End:
34349407
Strand:
+
Ref_name:
OSA-LNCN4874
Sequence
(OSA-LNCN4874.1):
CCAGAUGAGUGUUUUGGGAGAAAUAAGACAUCAUAAGAUGCAUGCAGUUGCAUUGCAUGAGAUAGUUGUAGGUAUCUAAAAUGAUAAUGAAACCCAAGGUGUUUUAUUACAUUAUGUUCCUAAAGUUUACGGUGAAAGAUAAUGAAAGGAUGAAAGGCAAACACAAAGAAUAUAAACAGGAGGGUGCAACGCAACACCCUUUUCCUUUACUAUGGGAUGUAUGAACCUUUCCUCCAUCAUAGACCUAUAAACGGACAAAACUACAUGAUCAUCAAAUACAGCAACCCCCAUUCUUUUGCAGUUGUGGAUUUCUAGCAUCCGAUGAUAUCAGUAAGCUUGUAUCACGAAAUAAUAGUAAAGCUAACAAUUGCUAUUUUCCAAGGUAUUUCACAAGAAAAAAACAGUUUCUAAAGAUGUUACCAAGGAUUCAUAAUCAUAUAUAAAAGAUUGCUUAGCAUGGAAAUUGGAAACACUGCUACUUGCUUGUGUUUUGUCCUAGAUCUUUCUUGUAUUUGCACGGGGAUCUAUAGGUGACACAAUCUUAAUACAGCAUGCGCACCACAUAAAGGCAUCUGAAGUUUGCUUCCAGAGGAUGCUUCUACUGACUACAAAUGUAGUAAGCAGCCUCAAGAACACAAGCAAUUUGAGUUUGUUAGGAAUUCUUGGAAGAGCAUUAAAAUCUACUCAUAUGGUAUGUAUAUGUAUAUAUAUAUAUAUACACACACACACUUAAUGUUAGCCCAACAAUGUAAGUGUGUGAACCACGUUUCUAUGAUGAAAUUAAACAGAGGGAAACACUGAGUCUCAAGUUGUUUUUUUAACAUGGGUCUUAAGUUUUGAUGUUUACCUCACUAUCUAACAGACCUAAAGUUUUCACAAUUUUAGAACACACUGUGGGUCAAACCUCAAACUUGUAGUACAGAAUAAAGAUGAACUAAAACAGCUGAACAGAAGAAAGCAAACAUAUAGAUGUUAAUGUUAUUGCUGUG
Sequence
(OSA-LNCN4874.2):
UGAGUGUUUUGGGAGAAAUAAGACAUCAUAAGAUGCAUGCAGUUGCAUUGCAUGAGAUAGUUGUAGGUAUCUAAAAUGAUAAUGAAACCCAAGGUGUUUUAUUACAUUAUGUUCCUAAAGUUUACGGUGAAAGAUAAUGAAAGGAUGAAAGGCAAACACAAAGAAUAUAAACAGGAGGGUGCAACGCAACACCCUUUUCCUUUACUAUGGGAUGUAUGAACCUUUCCUCCAUCAUAGACCUAUAAACGGACAAAACUACAUGAUCAUCAAAUACAGCAACCCCCAUUCUUUUGCAGUUGUGGAUUUCUAGCAUCCGAUGAUAUCAGUAAGCUUGUAUCACGAAAUAAUAGUAAAGCUAACAAUUGCUAUUUUCCAAGGUAUUUCACAAGAAAAAAACAGUUUCUAAAGAUGUUACCAAGGAUUCAUAAUCAUAUAUAAAAGAUUGCUUAGCAUGGAAAUUGGAAACACUGCUACUUGCUUGUGUUUUGUCCUAGAUCUUUCUUGUAUUUGCACGGGGAUCUAUAGGUGACACAAUCUUAAUACAGCAUGCGCACCACAUAAAGGCAUCUGAAGUUUGCUUCCAGAGGAUGCUUCUACUGACUACAAAUGUAGUAAGCAGCCUCAAGAACACAAGCAAUUUGAGUUUGUUAGGAAUUCUUGGAAGAGCAUUAAAAUCUACUCAUAUGGUAUGUAUAUGUAUAUAUAUAUAUAUAUACACACACACACUUAAUGUUAGCCCAACAAUGUAAGUGUGUGAACCACGUUUCUAUGAUGAAAUUAAACAGAGGGAAACACUGAGUCUCAAGUUGUUUUUUUAACAUGGGUCUUAAGUUUUGAUGUUUACCUCACUAUCUAACAGACCUAAAGUUUUCACAAUUUUAGAACACACUGUGGGUCAAACCUCAAACUUGUAGUACAGAAUAAAGAUGAACUAAAACAGCUGAACAGAAGAAAGCAAACAUAUAGAUGUUAAUGUUAUUGCUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
34.76%
HE_num:
HEP:
60.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.43
Avg Expression:
8.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | 1.0423946916388 | 0.00350441533580199 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.82186597767838 | 7.54199231283426e-09 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.44189199825028 | 0.0120489214626368 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.07516378742183 | 1.25168582824721e-10 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.26427199082302 | 0.00846472382926748 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.42204187247281 | 2.97545304702383e-12 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.97695770140503 | 8.0551436447852e-14 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.81664437042399 | 1.12441444076101e-07 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.71534516396796 | 5.95808001374162e-08 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.01783307939211 | 4.85964201707063e-09 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.53141597291388 | 1.19320402896783e-05 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.2453413339928 | 0.000510232764398109 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.13750948542311 | 6.95155656888943e-05 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.01752247631881 | 8.87726835453985e-07 |