Chr:
Chr4
Start:
34059190
End:
34059975
Strand:
+
Ref_name:
OSA-LNCN4865
Sequence
(OSA-LNCN4865.1):
CACGUAGGCAGAAAAGGAACAAACGCACACAGAGAGAACAAAAACGGAGAAGUCCACGCUUGAUCCUGACCGUCCAUCUCUUUUGCAGGAACAGCUGCACCGCGAUACCACCAAGACUAGACAGGAGACAAAACCGAAACCUGGGUGGCUGUCCACAGAAUUUUCACAAUUGCAGACCUACGAGAGCUGCCAAAAACGGCCUUUUUUGGGAUGCUGCCACUGCGACAUUUAAGUGCCGAAACCUUCGAGCGGUUCAGGUUUCAUGACCCGGGGGGAGCCCCUCCUGGACAGCCAAAAAACACAGUAUGUAUGGCCAAAUCAAACCAACUUGCCUCCCCACAAAUAUUAUCCGCUUGCUCGUCUUAAUUUCCUUGGGUCUUAAGAAAAUCCAGCGCCCAGUUGCACGCGUCGCGCAGCUUGGCCUGUAGCUCAGCAUCAUCAAUUCAUCAUCAUACUCAAGAUUCAUAUAGUAUUGCUACUUGUGCAUGAUGCAGAUGCGGUGCAACAUCGCACACCACGCGCUCCCAGCGUGAGGAGGAUCCAUCAGGUGUAUUAUGCACAUGUAUGCGUUCUGCUUCUGCACAGACAACAGAGAAGAACGGCGGUUUUUUUUUGCACCAACCUGCAGCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
31.91%
HE_num:
HEP:
66.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.63
Avg Expression:
14.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.31728792643511 | 0.000346550467980759 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.94364022167921 | 1.12944112458891e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.02680793754179 | 0.0155031213523762 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.69996894134272 | 5.79990390507906e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.82761056025734 | 3.197876712762e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.47599590228003 | 6.32215438984315e-06 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.59721499694305 | 0.00461137907132921 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.61803815346736 | 4.5156272166392e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.98111135061742 | 5.79043070928422e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.31260426895485 | 0.000336302409994208 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.74984294381907 | 1.10643458499277e-06 |