RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4859

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

33769733

End:

33770276

Strand:

+

Ref_name:

OSA-LNCN4859

Sequence
(OSA-LNCN4859.1):

CUGUUAUUACAUUGCAUAGUCAGCAUUAAGCCUGGAUAAAAAAUGCAGGUUACCCCAUCCAAACACUGAGUUAUAUACAUUGAGCACAGCCAGCCAGUAAUUAGCUUUUCUAAAAUGUGAUUUCCAUCUAAUUUCCAGGACUGGCAGCAAGAGAAAUGAAGAUUUUCAGUGCUUCAAAGUAAAAAGGGCUCAACCAAACAUUCAAUUACAUUCAUGAUAUAUCAGAGGUAAUUAUUGAAUCCAUGAUAAAAUGGCAUAGUCACUGAGAAAGUGAUUCUGAGUAGAUAUCUGCGUAUUCCUCCUUUUGAAGGUGGUGAAACCCACCAAGCAAUCGCCUCAAAUAUAGGAAGAGUGGAGCAUACACAAACAAUAACGCUAGCUCAAAUGUUUUUAGAAGGAGGGACCAGCCUUAAUAUGAUUCAGGCUACACAGUAAGUUAUAUUGCCAAGCAAGCA

Sequence
(OSA-LNCN4859.2):

GUUAUUACAUUGCAUAGUCAGCAUUAAGCCUGGAUAAAAAAUGCAGGUUACCCCAUCCAAACACUGAGUUAUAUACAUUGAGCACAGCCAGCCAGUAAUUAGCUUUUCUAAAAUGUGAUUUCCAUCUAAUUUCCAGGACUGGCAGCAAGAGAAAUGAAGAUUUUCAGUGCUUCAAAGUGGUGAAACCCACCAAGCAAUCGCCUCAAAUAUAGGAAGAGUGGAGCAUACACAAACAAUAACGCUAGCUCAAAUGUUUUUAGAAGGUAACGUGUGUCAUAUGCUCUUUUUUCUUAAAUAAAUAGCUCUGUAGACUUGCAAGUCUUUCCAUAUUUGAAUCUGAAGGUAUUACCAGGAGGGACCAGCCUUAAUAUGAUUCAGGCUACACAGUAAGUUAUAUUGCCAAGCAAGCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

29

LEP:

5.89%

ME_num:

206

MEP:

41.87%

HE_num:

256

HEP:

52.03%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.67

Avg Expression:

14.46

Tip: OSA-LNCN4859 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.021979481500530.000642437154147705
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.180117318153339.28080438954427e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.182564872624871.51316473263234e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.156315899209612.6960108842535e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.332960289700621.81205337211848e-05
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.188670915167376.81286592690216e-07