Chr:
Chr4
Start:
33815898
End:
33818080
Strand:
+
Ref_name:
OSA-LNCN4858
Sequence
(OSA-LNCN4858.1):
AAAUAAUUGUUAGCAGCCCAAACAUUGUAACAACAAAGAAGAGACGCUGAUACAACAAAGUAAAUAUAUUGGCACCACUGCCUGCUGAUGGGGCUGAAAGGAUUCUUUGCCUUGCAUAAGAAUAACAUGACCACAGAUUGUGCACAUGAACGCAUGUGCUGACUAUCCAUGACUUCACACAAACCUUUCAAGAUUAGACCCAGCAUGAUGUAGCUUGGAUUGGGAUGCUGCAAGUUGCACACAUCAAGCUCAAAACUGUCCUGUUCAGGUAAACUAGCAGUCUAGUGUAAAAUGGUCCUAUAGAUGAUACGGAAAAAUAUUAUAUUUAUUCGACUCCAAAGCAAUGGUAAAAAUGGCAUUGUGUUCUAAAGUAAUACGAGUAUGGAAUAAAUGUACAAGAACAGGCUUUUCAUGGUAUAAUUUAUGCUGUAAACCAACCAGCAAUAAAGGGUUCCCUUCUUGGAAAUAUUGUAAGAGUAUCAUUGUUAAGUGUUGAUUGUGGCCAAAAGAAUGCUCCGAGAAACAAAUAAAAUUUGGUGGUUAGUUCUCACUUCUCAGUUGCCCCUAAGCUUUAUGUAGACUACGGUCUCUCAUUGACAGCAGUAAUUUAUCAAACAAGCAAUGAUGAAAAAACAGUCAUUUUUUGUGGCUAGUUUCCAGAGUACAACCAUUUGAUAAAACAAAUAUAAGAACAAUGUAAUCAAUUCCAAUGCCCCCCAAAUCCCAUGAAUUGGUACUCAAACUAAAUGAGAAGCACUGUUUUAUGGACAAGUAGACACAAUUAAAUUAAAAAAUGGUUGCGUAAGACAGAUUGAUACAGAAAGCUCUCCAAGAAUAUGGUAACUGCCAGCUGGUCACAAAAAAGGAUACUAAUGCUUGGCAAGUUGGCAUGGCAUCAGCUAUGAAAUAAUUAAAGUAACUUUUAUUUCCAAAUUUUCUCUUUGAAAUCGUAGUAGUAAUGUAUCAAAAGUCAAAACAGCGGAACAGUACAUAACUACGAUCCAACGUUACAUUUCAUAAUGAAACAAAGAACAUAUUUCUAAUUUAAUCAAGGAGCAGGCGAGUUUGUGUAAAAAGUGUGGCUAGGAUGAGAACUAAAAGAAAAUAGAUUACAUUUUAAGUACUAAGUAGAAGAGCUGCCGGUUGAAGUUGCAAUUAGUCUGUACGGAGCAGGAACUUUGGAAGGUAAUAAUAGAUUAACAUAAUUUAAAUAAUCCAAAAAGACAAACCCAAGCACAUGGCACAGCAUUAUCCUGCUGCUGCAGCCCAUAAGGCAAAAGUAGACUAAUAAAUAAAGGACAGCCAUUGUGAUUACUACAGGAAUUCCCAGUAUUGCAGACUGAAAUAAACAAUUUUCAUAACCAUAAGAAACUGUGGAAUGGCUUAUUGCAAGUAUGCAAUCCAAUCAUAAGACUCCUAGUAACUACAUACAACGGAUCCUCGUUGUAACCAUCCGAAUCCAACUUCUCUUUGCACAAUCCUGCUGCAUACUUUGGUCAUUCAUGCUUGCAUCAAAGUCUGUUUGGUGGCCAGUUGCUAAAUUUUUAAAGAGAGGGGAGUUAAUUGCUGAAACUACAAGCAUAAUAGCGCUGUAAUAGCCUAACACCACCAUAACAGCAAUGAUUAUGACCGAUGGGCAAAACCAUUUACAUCAAGUUAUCACUUCUAUGAUGGGCUACCGAGAUAGAAUUCAAUCAUUCAGGAAUAAUUCCCAGACAACCCGACCCAUCGUCCUGAGAUCCAAACAACACCACACGAGUUCAAAUGCCCCACGGGCUUUGUUCUGCUUCACCAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.16%
ME_num:
MEP:
61.79%
HE_num:
HEP:
27.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
26.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.3017562840112 | 6.64499664038606e-20 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.30435724124825 | 6.68541646316683e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.31626829863275 | 1.19442227793822e-12 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.08159804080185 | 0.0102110759699008 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.10361257619471 | 9.58051549760702e-15 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.7929382730776 | 9.51620318223233e-09 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.29799245287501 | 0.00194729628347601 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.05162349648748 | 0.0403765532512385 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.12377892916444 | 0.0181726139083514 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.20280608422396 | 0.017422396776909 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.89194895503278 | 3.96651477352461e-07 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | -1.8057786636744 | 0.00204357247187609 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.1132828451074 | 1.15853965817927e-12 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.05265092263485 | 0.0383117684291206 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.14493255947169 | 0.00361557594770908 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.63505461573174 | 0.00490562830871415 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.63513965856363 | 0.00505060001246527 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.6352249323397 | 0.00492035337252704 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.7736977331984 | 6.02370513483777e-64 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.27503815004675 | 0.000496531762522568 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.79188187775701 | 3.10983670883836e-07 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.42373335404434 | 5.56566854845124e-19 |