Chr:
Chr4
Start:
33574598
End:
33579697
Strand:
-
Ref_name:
OSA-LNCN4851
Sequence
(OSA-LNCN4851.1):
CACACAUAUGUAUAGGAUGGGUAAUAUAGUCAUUUUAAAAUAUUUAACGGUCAACUAAUGGUCAACUAACGGAGAUGGGUAUAGAGGAGAUCAAAAUGAAAACUCAGGGGUAUAUAAGGGAUAAUGUCAAAUUCAGGGGUAUUGAAGGGAUUGAGUAAAUUUUCAAGGGUAUAUAGGGAAUUUUCUCUUUUCGUAUCGAUCGAUGUAGUAGUAGUAGUAAAGGCUGGGUCGUAAUGACUCCUGUGGCUAAAACUAUAUCGCCGGUGCAUGGUCAAAACAAGCUUUCAAAAGGCCCUGCCGAUGGUUGCCACAAUGCCACAUGCCCCAUGGGCACUUCUCACCACUUUUAGAUGCCAAUAAAUAUACAAGCAUCAUGGUUCAUAAAUAGAGAGAGAGGUAAUGCCACAGACAAGGGUUUAUGGCCAUCCCGGCCGGUUAUUUUGCUUCUGGUACAAGCCUGUUACUUCUUGUAUCCAAUCCAGCAGAGAUAGAGAGAAACACACACACAAAUUCUUGCAUGCAUAUGCUCCUACAUGUAGUAGACACAAGUACUAUCACACCUGGACAAUAUAGCAAGCACAAGCUAAAAAAAAGGGAGAUGUGUGUAUAUUAAAACAGGGGACAAAAACGGGUCAGCGAGAGAUGGGCUGUGCAGCUGAUGAGCUGAUGAAAGAUUGCACGGUGUGAGUGCGACAGCAAGCAGAGAGGAGUAGCUAGCAAGCAGCUUGUUUUGCUAGAGAAAAAAAACAGAGAAACCUUCCCCGUUUCCUCCUCCUCUGGGUCGUUUCUGCAGGCUUUUGUAGGUGAACGAAACCAACAGCAACCAUCCAUGAGACGACCAUGAUCCAUCGGUCCCUGUCUCAUUCUCCCAUCGAUCGAUCCAGAACGUGCCAUACAAGAUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
36.99%
HE_num:
HEP:
57.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.79
Avg Expression:
30.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.55912424672694 | 0.0234476470035597 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.05824888404008 | 0.0217298110107542 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.54505325015826 | 0.0117783938755444 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.17121406228223 | 0.0101999990669931 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.64798370521357 | 0.0085645993863155 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.6380716726045 | 2.81829317706409e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.23872681851236 | 0.0175757678832987 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.23459517516484 | 0.0033481408690163 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.81736718112637 | 0.0292830669970046 |