RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4826

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

32477777

End:

32480854

Strand:

-

Ref_name:

OSA-LNCN4826

Sequence
(OSA-LNCN4826.1):

CGACGCGGGUAAAUGUUUCGUCGGGUGGUGAGGGGAUCCCGGAUUCUCCUCCCGUCAACUUCGCCGGCGGUUGUCGCGUUCCCCGGUGACGCCGGCGAGACGACGUGACCGUUGCUUCGCCGAGACGCAGGGCGGCAUGGGCUGUGUGUGGGCCGCACCAAACGUGGCGGGCUUCUCGGACGCAGAUGGCGCUUUCGCGCGGCAGGAUAAGGGCGCCUUCUCCACCGUCCGUUUUACAUCCGACGGGUCUCGUUUAUUCGUGGGUUUCGUACGCCUUUGACCCAUUUUUCUCCCGAGUUACUGGGUAGAACUGGUAUACGUGUCACUUUGUCAGGGGACUCAGGUAGUAAGUCUGGUUUGGAUGAAUGGAUGCUGACUUCCAGAUCUGGAAUUAUCCUCUUCUUUGCUCUAACUUUUGAUCAGUAAUAAUCUCGGUAUGCAUAGUUAUAGUGUUAAUCUAGUUUCUAAAUCUUAUAUUGAUCACUAAUCACUGCUGCUGCUGCUGCUGCUGCUGCUGCUAUCAGUCUGUUAUUUUGGUUGGUGUUGCAGUGGUGAUGAUCACAUAAAAAAGUUGAGGCCAGGAGUUGCAACAGUUAUUGGCAAUGGAUAGGACUGUUCUUCUCCAGAAAUCAUCUACUGGCGGUCACCAUGGCCAAGUUGCCCCCUGCUGCGCUACACACCCAGGGAUGAGGAGGCCCGGAACAGCCAAGGAAAGCUCGUAAUUCCACAUGCGCGACACGCAUGCAUAUCGAUCAGUGGUGGAGGCCCAGGCGAGGAGCGACCAGAGCAGCAUGUGGGUGGUGCAUGAUGUAUGCAUGGUCCAUGCAUGCACGGAUUAUGAUAGAUGAUGGUAUCUGCAUGUUCGUCGUUACGACUGGAACACUCGAUCGAUAUACGCUUUAUAAUACAUGAAACUCGCACUUCACUGUCUUGUGCGGUUCGUUUUUUUUUAAAAAAAAAAGUAUAUGUGUCCUCCUAUCCGCUGAUGGGUUGUUGCUCGUUUGUGCUACAAAGCGUACACUCGUACAUACUUAUUCUUUUCUAAAGAAAGGUCUAUAUAUGUACAUAUAUACAGCA

Sequence
(OSA-LNCN4826.2):

CGACGCGGGUAAAUGUUUCGUCGGGUGGUGAGGGGAUCCCGGAUUCUCCUCCCGUCAACUUCGCCGGCGGUUGUCGCGUUCCCCGGUGACGCCGGCGAGACGACGUGACCGUUGCUUCGCCGAGACGCAGGGCGGCAUGGGCUGUGUGUGGGCCGCACCAAACGUGGCGGGCUUCUCGGACGCAGAUGGCGCUUUCGCGCGGCAGGAUAAGGGCGCCUUCUCCACCGUCCGUUUUACAUCCGACGGGUCUCGUUUAUUCGUGGGUUUCGUACGCCUUUGACCCAUUUUUCUCCCGAGUUACUGGGUAGAACUGGUAUACGUGUCACUUUGUCAGGGGACUCAGGUAGUAAGUCUGGUUUGGAUGAAUGGAUGCUGACUUCCAGAUCUGGAAUUAUCCUCUUCUUUGCUCUAACUUUUGAUCAGUAAUAAUCUCGUCUGUUAUUUUGGUUGGUGUUGCAGUGGUGAUGAUCACAUAAAAAAGUUGAGGCCAGGAGUUGCAACAGUUAUUGGCAAUGGAUAGGACUGUUCUUCUCCAGAAAUCAUCUACUGGCGGUCACCAUGGCCAAGUUGCCCCCUGCUGCGCUACACACCCAGGUUAAAAGGCUUACCACUGCUGCAAAAGGCAGGGCACAUUAUUUCUGAUGCAUGUGAACAAGCAGAGCACCAGGUCCAGAUGUAAAGAACUGGGCCCAAAUGAUCCUUUAGCUCAUAAGUCAUUAUCAAUAGUACAGUUCAGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

350

LEP:

71.14%

ME_num:

139

MEP:

28.25%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.89

Avg Expression:

1.84

Tip: OSA-LNCN4826 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-1.84229810496350.036929905964699