RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4812

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

31500863

End:

31501904

Strand:

-

Ref_name:

OSA-LNCN4812

Sequence
(OSA-LNCN4812.1):

AGCUUUUGUUGAGGUAAAGGUCGGAUUAUCAAUUAUUGAAAAAAAUGGAAAGGAAAACAGUGUGUAGAUAGUACUUGGAAUGUAAGUAACUGUUCAUGAGUGGGUCACAUCAUUUCCAAAGAAAAAGUUAAUGGCCUUUUCCAUUCUAAUCUUGAGGUGGCAUCAGGAGAUCAUCACAGGUAAUGAUAAAAGCAUUUUCUCUUUUUACUCUCUAACAAACAAGAACACCCAGGAUGCCUGCACUUUUGGUCUCCGUCUACUCUUGUUGUGACCUAACCAGAAAUGGGCAAUCUUUUGCAUCUUGAUCUUUCUUUUCUUGUCAUCUACUCUUUGCACAACAAAAGCACACAACUUUCCUCAAACUUGGUACAAGUUCAGUUGCUUAAGGGCUCAGCUCACACUAAAGAGCGAUCUAGAUGCAAAUAGCUGGCAUCACCUAACAUUUUCAGCAGGAAAAGGGCUUCUAGGUAGAAUUUCUUGUGUGCUUUUUUCCUUUUAUUUUUAUGCUGAAAAGGCAGGAUAAGCAUUCUUGUGUGCCUGGACCAUGUGUUUUCCAGAAAGAAGCUAAUGAUCCUGUGACUGUUUCGGGGGGCAAGUAGGACACUCACCCACCCAUGAUAGGUGACACAGACAGCUACAGCUCCUUCUCAUGAAAACUUGUACUGAUUGUCAUGCCACUGCUUGCUACAAUCCUACUCAGGCUCUUUGCAAACAGGAGAUGAUGCAGGUGCUCACCUGAAUGUUCUUCUGGGAAGACGAGUCCCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

217

LEP:

44.11%

ME_num:

254

MEP:

51.63%

HE_num:

20

HEP:

4.07%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.76

Avg Expression:

4.58

Tip: OSA-LNCN4812 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.253769425084340.00705613120172772
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h-1.618557171843420.0136980522787091
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.664356375884830.000698988749710037
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.020540483895410.00829445509491259
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.420885839643770.00283951964513236
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.036391012743170.0201481005752489