Chr:
Chr4
Start:
30975799
End:
30976283
Strand:
-
Ref_name:
OSA-LNCN4806
Sequence
(OSA-LNCN4806.1):
GCUGUGUUCACGUGUUCGUCGGUGCUCAUGUUCACGGGGACGAUCGAGCUUGUUGACUUGCCCAGUCCUGUGAAUCACAUUCGCAGUUGCAUCCACAGCACGGCGGCUAGUACGCCGCUAAUUUUUAUCAACGAACAGACUCAUCGUUUGUUGUACAGGUGAACAACACAACUUAAAAGAUAAUUUGUGAGGAAAAUUUUUAUAUACAGUAUGUUUUUAAUUUAAAAACCAAUAAUGAAAAAUAACACAACAAAAAAAAUCAAAAUCAACUCUAAAAUUAAAUUUUAGCUACGGCUGAUAAGCUAAAACGCAAACUAACGAACUCUCGUCGAUAAUCCGGUCAACAUUUCUUGUAAAAUGCUCCCUCCAUCCCAAAACAAACUCGCUUAUAGGUCGGUGGGUUUCUUUUAGGACGGAGAAAAUAAACCAAGACAACAGUAAGGGGUACAUUGCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.7%
ME_num:
MEP:
27.44%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
5.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.1301883514794 | 9.9551966208627e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.63710983335086 | 3.92856022750207e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.27053410474729 | 4.54457256187634e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.87192005003204 | 1.69491042786176e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.02173556283065 | 6.98198694741345e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.69409093427117 | 1.80751566463404e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.66004112019516 | 4.95541764071969e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.29085615267088 | 1.71404720221424e-13 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.527430031217 | 1.58759242376361e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.8191498555027 | 1.88150694308645e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.39272905620857 | 3.06778841372427e-12 |