RiceNCexp:Browse

OSA-LNCN4804

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr4

Start:

30966316

End:

30967711

Strand:

Ref_name:

OSA-LNCN4804

Sequence
(OSA-LNCN4804.1):

CUUCGAAGCCUCAUCCUCCCAUACUUCAGUUGAGUUGCCCCCAUUUUCAACCUGCAAUGGAUGAAGUUUCAGAUAGCAAAAGCACAUCGAGCCGUGAGAAUCUCGAAAGUUCAGAGACUUGUGCGAAGAAAACAGCUGCAUGAUCGUUCUACACCCGAUGUCGGCCACGCUCCGUCAGCUGAGCUCCUUCUUGCUCGUCAGAAAAGAAGAACAAGAUGGCAGCAGCGGUGUGAAUUGGACCAAAGAAUGUCAUGCAGUGUAGUUGCAGAAUUGUUGAUCAUGCCAUGCUUCCCCCAUGAUGGCAACCUGCCUGUGGCACGCAACUCGCAACAAUGGAGGGGUCCUUUUCAGUAGGCUCGCACAAACUAAACACAUAAACUGGGAUCCAGCUCUGCAAAAGGAAAGGCAGGAUGAGAGCCUUCUCAAUAUGGCAACAGCCAACAAGGGCAGUCAGACAGAAGUAGGAACGGGAAAAAGGUUCCUUUUUCAGGGCAUGUCUGGCCUUGCCAAAACUCAUUCCUGAUCGAGGAGUUGUUUAGUAAGCUUGAACAGUUACUAAACAACAGGAUCCGGUUUGCCCCUUCACUUUCUGCUCUAAACCGAAAUGGUCUCACCAAAACCUUGUGCUCUUGGCGAAUCACAAAAGGGAAGAGCAAUUAGGUUAAGCAGCCCUAUGCUAUUAAAGAAUUAGUCCUACUAAUGAGCAAAGAUUUGGAGAGAUCUAGCAAUAUGUUAUUGGUCUAAUAUGAUCUAUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

457

LEP:

92.89%

ME_num:

MEP:

6.91%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

carpel

Tau :

0.92

Avg Expression:

0.46

Tip: OSA-LNCN4804 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.91392727593885	0.00628082753771254
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.18148522340917	0.036033262773062
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.41354385937102	0.0248596853982821
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.7666635577423	0.0064886939673709
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-4.18466110398632	0.00288473366635682
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-5.2270694233373	0.000563598746860126