RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4798

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

30610330

End:

30610758

Strand:

+

Ref_name:

OSA-LNCN4798

Sequence
(OSA-LNCN4798.1):

GGGCGCGGAGGCCGCCUACGACGUGAGUGCGUGGCUGUGCCAUUGUGUGUGUCGCCGCCGGACAGGCGUUAUCGACGCCGUGGGUGAUCCGGAAGAUGCGUACGUGCGGACACAUGGCAUUUUCUCUACACGAAAAGUGGGCCAUGCACUCUUGUACACCUUGCAUUUCCACUGGUAAGUGAUAACUGAGCUGCAGGAGAGAAGUUGUGCAUCUUGGACUCGACCAUGCAGAAACCUGCCCCUGCCGUGCAGUGCAGGGCUCAUACAUGUACACAAGCUUCACGGCUCGAGACACGCGGAUCCGCGACGUGAACGGCUCUUCGCCGAGCGACUCAAACCGUGGUGGAACCAGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

400

LEP:

81.3%

ME_num:

82

MEP:

16.67%

HE_num:

9

HEP:

1.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

2.13

Tip: OSA-LNCN4798 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"2.756580845883680.0137344339284991