RiceNCexp:Browse

OSA-LNCN4794

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr4

Start:

29980349

End:

29982426

Strand:

Ref_name:

OSA-LNCN4794

Sequence
(OSA-LNCN4794.1):

AUUUGAUUAUAGAAGAGUAGUUAGUACUCAUCCAAUGCAGUUUCUUAAGUAAGGUGGUGAUGGUCCAUGCUUGCUUGCUCACAUGUACUGCUGCAGCUGCUGCUGAGAUUAUACAAUGGCACAUUAUUAUACCAGCCGUUGGACACAGACAGACAUGGAAUUUUGUAGUACUUGUCAGAACCGAUUCCUCUCCUUUGUGUGCGACUGUGUGGAGAGUGGAGUGUACCAGGCCUAGAUCUCAACAGAUGCGUCCUGGCUGCGUUGCGACUUCUGAAGAGAUUUGGCGUUGGCAUCCUGAGUGGAAUAUCUUGAGGUGAAGUAGGUGACCCUAGAUUGUUGUUGGCUGAUCCUGAGUAGCAUUCCACUACCAGAUUCCAGGGAUCAUGGAUUGCUGGCUGAAACAAAUGGUGUCAUAAAAAGAGUAAAAGUUUGUUAUAUGAGGCUCUUGGACAUAACUCAGAAA

Sequence
(OSA-LNCN4794.2):

AUGUACUGCUGCAGCUGCUGCUGAGAUUAUACAAUGGCACAUUAUUAUACCAGCCGUUGGACACAGACAGACAUGGAAUUUUGUAGUACUUGUCAGAACCGAUUCCUCUCCUUUGUGUGCGACUGUGUGGAGAGUGGAGUGUACCAGGCCUAGAUCUCAACAGUAAGCAUUUUUUUUUGGCAUGCCCUGAUGUAGUUCUCACAUGGUGUUUAGGACCAGGCUUUGUAGCUUGCAACCCCUGUGAUUACUAGCUGCCAAGUUAAAGUUCCAAGUUUGCAAAUUGCCUUAUACAAAGUGACAAGGGGCAGCUUUCAAAGCUCAGACUUGAGACUUGAUGGUCCAAUGGGCACAUGAUCUUUGUUGCUUCAUGGAGCAGGGUGUUUUUGCAUGGAUGCGUCCUGGCUGCGUUGCGACUUCUGAAGAGAUUUGGCGUUGGCAUCCUGAGUGGAAUAUCUUGAGGUGAAGUAGGUGACCCUAGAUUGUUGUUGGCUGAUCCUGAGUAGCAUUCCACUACCAGAUUCCAGGGAUCAUGGAUUGCUGGCUGGUACUGGUAUCCAAAUACUAUAUAUCCCUUCCGAUGCUGAUGUGCUUAAAAGUCAUCUUUUUCUUAGAAAACCCUGCAUAUUCGCACAGAAUUUUCACAACAAAACAACAGCAGACACUUGUGCGGGUAAGCAACACAAUAGCUGCUGUGUAACAAGCCAGAAGCCAAAGUUACUAUACCAUGCAAACCGAAUGAGUAAUAGCGUAGCAAAUACACUAUGGUCCCAUUGUUUCGCCUAUCUUGGAAUAAGCAAAACGGCAUAUUUACAAACGAAAAGUAGCUUGUGAAUAAAACGUUUAUAUACGUGUUUUUAGCGACCUAAAAGCAAAACUGAAAAUAAACUUCGAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

431

LEP:

87.6%

ME_num:

MEP:

12.2%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.93

Avg Expression:

0.71

Tip: OSA-LNCN4794 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-2.81228734693616	0.0205559067800204
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-1.80369738699761	0.038601354998874
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-2.51206644351422	0.00772323145278602
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-1.66796931547319	0.0183918059207302
5	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"	5.07969616882438	0.0162601106991892
6	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	5.04616480471152	0.001257931469248
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.77847097412786	0.00012194539902053
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.66817053320355	0.040904531001469
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.97653895053286	0.00258843216522864