Chr:
Chr4
Start:
29978985
End:
29979752
Strand:
+
Ref_name:
OSA-LNCN4793
Sequence
(OSA-LNCN4793.1):
AUUUGAGGUUUGAAAAUUUGCUUAAACAGUUGAACGGUUAGUUGAUUCUCUCCCCCAAAGACCACAUCACAUGGAACUAAAUGAUGGAUUGUUUACAGGUACCCACCACCACUCUCCACGCACUCGGCUCGGCUAACCGCUAACUGCCACUGGCACCUUCUGCUGAACGGCAAGACGAGAGAGAGACAGAGAAUUCCACUCUGCAUGUGCUGCAAGAUCACAGUAGAUCAGAGGCUCAGAAAAGAUAAUGCCCAAGUGUUGAAACAGUUGCAGAUUUCACGGGAGAGGAGCAGUUGUGUACUUUGCCAUGCUGAGCACUGAUCUGAACAGAAUCAAAUUGAGGGGUAGUUAUUUGCUGAAGAUUCAGCAUUCGACCUCUUGGUGAUGUUGCAUUAUCCUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.95%
ME_num:
MEP:
2.03%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
0.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.81505807968973 | 0.0111373030332906 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.24268977222377 | 0.000114947225370405 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.01633818244503 | 4.71501213281488e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.03792917904059 | 0.0244457820351356 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.40695323008607 | 0.0301488354659006 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.13577654138265 | 0.00409684354362655 |