Chr:
Chr4
Start:
29511569
End:
29512217
Strand:
+
Ref_name:
OSA-LNCN4785
Sequence
(OSA-LNCN4785.1):
AAGGAAACGAGGAAUACAUCAACCCGCAUCGUAGUUCUUGCCGGACAUGUCGACUUCUCCUCGCCCAUAUCCUGGGAACCCCACUUCCUCACCGCUUGCGACCCAGGUGGCAGCGGUGGCCUCCUCAGCCAUCGCCGCCGCUCGGCCUCCUCGGUGAGAGACGGUGUUAAUGCCGAAAUUUGUUCGAUCUCCGGCGAAGGGGUAAGCCCUAUGUUUCGCCGGCCCUAGUGAAUCUAUUGGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.11%
ME_num:
MEP:
23.78%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
3.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.08654734926089 | 0.0470853179962181 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.42590619715348 | 0.0496857623487471 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.93288559890765 | 0.0115863249653562 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.93298663837537 | 0.01167575360599 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.93314721759447 | 0.0116078110703969 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.58459820515142 | 0.00512883855669991 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.01645423770667 | 0.0385944923237261 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.81151476473554 | 0.00191840939008275 |