RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4772

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

29066893

End:

29067360

Strand:

-

Ref_name:

OSA-LNCN4772

Sequence
(OSA-LNCN4772.1):

ACCAGAUGGCCAAUCCCCCACCCAACAUAUUCACAGCCUAGAGUGAUAGUAGAACAUGCUUGGAUGGACACAUCGGAGUGGGAGAAAUGAGGCCAGCUGGUGAACAUGAUUAACAAGUGAGCGCACAAAUAAGUGAAGCAACGGCUGCAUUACCACCAUCCAUCUCUAGGGUCUACUCCCUCCAUUUCAUAUUAUAAAACUUCAGAUCUCAAAAAUGGUGGUGUCAAGUGCUGUUUCAUUACGAAUUUAAUUUUUAGUCUAUUAUUCUUAAUUUCAAUGUUAAUAAUCAGCAGUAUGUGCUAAUAUAUGCAAAAACAUAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

206

LEP:

41.87%

ME_num:

257

MEP:

52.24%

HE_num:

28

HEP:

5.69%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.79

Avg Expression:

4.58

Tip: OSA-LNCN4772 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.596503521215430.000952139742632915