Chr:
Chr4
Start:
29053189
End:
29055799
Strand:
-
Ref_name:
OSA-LNCN4770
Sequence
(OSA-LNCN4770.1):
CUCCCCUCCACACAACCGAGCUCUCUGAGCUCUCCUCUUCUCUCUCUCUCCCAUGCUAGCCAUCGGUUGAUCUCCCUCACCGGAGCAUUGCCGACCAAAUACUCGCGCCAAUAGCUUCGCCUCAAUGAAGUGAAUCCAUUUUCCUACUUUCCCCUCUUCCCUACCCAUUCCAUGAUCAAGCCACCACAGCUACCUCUUUUGCUGCCGGAGUUGAGCUCUUGCCCUCGCCGUUCCGGCCUCCUCUCUCAGUGCUUGUGUAUGAAGCCACCCUCCCUAGAUGCGCGUCGCUCGGGAACAUCAUCUGCCGCCGACGCUACCUUUCCCUGUCCACCGGAGCACCAGCGCCCUUCUCUCCCUCCUCUCAGUUCCCUGGCAAGAAGCAGAGAAGAGGAUGAUGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCUGACAAGUGGGCCCAUAAACAGUACUGUCUCCAUUUCUCGAUUUCAAGUUAUAAGACGUUUUGACUUUGGUCAAAGUUAAACUGUUUAGUUUUACUAAGUUUAUAGAUAAAUAUAAUAAUAUUUAUAAUACUAAAUUAGUUUCAACAAAUCAAUAAUUGAAUAUAUUUUCAUAGUAAAUUCGUCUUAUGUUGAAAAUGUUACUACUUUUUUUCACAAACUUGAUCAAUCUUAAAACAGUUUGACUUUGACCAAAGUCAAAACGUCUUAUAACAUGAAACGGAGGGAGUAACCUUUAGUAUUUUCUAGAUUUAAUCCAAAUCCUAUUAUUUAGAAGCCCAUAUCUCCUAAACCAUAUAUCCGAUUCCAAUGAAAUUUGACCUAAAUUCAUCUAAAUUCAAACUCUACAUUUUGAUAUCAGACUUGCUAUUUUAAGAUUUAUUUGAAUUUCCUUAAUUACCAUUUGAAUUUAUAUUUGAUUCAAACUUAUAUUUGAAUUCUUACUUUAAACUUAUAUUUGAUUAUCGCAUAUCUUCUUUCAUUCCAAAAUACCCAUUAGCCCCUAAAGAGCCGCCGGUUGGAACUUUACGCCUUUCAUGGGGAUGUUUGCCCGGUCUACUGGCCCUUACAUCAGACUGUUGGUUGUAAAGCCCAGCAAGGUCAAAUGUGCUGCUCCUAGCACCCCACGCCUCUAUGCGUACUGUGGUUGGAGCUUUACUAUUCCCUCGACCUCCACAGCACGCCGCACAGUUAGCUCUCGGGCUAUGUGUGAUCCAAGCCGCUCCGUCACCACCCACGGUUGUCGGAGUAACACUUCCGCCUCGCUAAACCUGCAUGAGCCUCCUACUUCUCUAGUCGAUAUGUUGUCUGUUGACACCGGCUAGAGAAGUGUUAACGAUCAAAUUUGGUAGUUUUAGUAUCGGAGAUGGAGAUAAAACCGAAGCGGAAUCUAAGGAUGGAUCGUUCCGGGAACAGAGCAAGAAUCAGCUGAAGUCCGAAUCGGCUGCAACCAGAAUCGACAGAGUUCGAGUCGGACAAGGUUAGCCGAUUAAACCGAUUCCGACAAUGUAACUCGAUACACGUUGUCGGGUUGAGUUAAUGUGCUUCAUGUGGAUUGCCAUGCACGGAUUAAGUCCUGAGAAGGCAAUUGUAUCUAUCAAUUAGGAUAUUUUAUGUAAUUUCCUUAGAGAUAAGUUUGGGCAAAAGUCUGCCGCAAAGACUUAUGGUAUCUUAGAGUUUGUUAGAGAUAAGAGUCGUGUCUGACAUGGACAUAUUUUGUAAUCUCGGGUAUAAAUAGACCCCGAGCCCCAUGUAAUCAAUCUAACACACACGUUCAAUACAAUCUCGGCGCACCACCACCCUUUUACUUUCGUUUUGUUUCGACGAGUUCUUGCUUUCGGGUUGAGCUGCAUCGGUUUCAAUCUUCAACUAGAGGUAAAACUUGUUGUGGCGGCUUGCGUUAUCGGGAUUAGUGCUUCCAUCGUUAUGAUACUCUAAUCUUGUUUAUGUAAUUCGUCGAGUUACCAUAUAUCCUAUAUAAUCUCUGGCAAUACUGUUAUUUAACCUUCAAUCGGCUAACAUCUAUUGCGGGAAGGCAACCGAUUAGGUUAAAUACCAACAUUGACUUAGAUUAUAUAGGAUAUCUACCACCUUAUGAAACAUCCAACGUCUUGAUUGUCUAGAUAUUGUUGUUCUUUUCAUACUUAUAGCUGCAUCAGUUGAGUUUGACCUUAUAAAUCGUAAUUAGAACCAUGAUCUCUAGCCUGUCUUUGGUUGCCGAUUAGGGUAAUGUCGGGGUUUCAGCCGAUCUUACAUGAUUUAGCUUUAUAUUUCAUAUGCUUAAUUGAUAUGCUAGAUCUGCCCUUUAUGUUAAGAUCUUGUUGCAUCUAGGUAUGUUAGGCUUCUGUUUGAUAUACUUUGCCUGCUUUAAUAUCUUAAUAUAGAGUGGUAUCAGAGUAUUAGCCGAUACAUGCUAGAUCUAUCUAAUCGGCUAUGUUAUGAAUGCUUAUAGUCCUCUCGUUAGUAUAUAUUUCAAUCUAAGUGAUUUAUACUGUCUCGGCAUGACGACCGAUCUAUCCCAAUCACUUGAUUUAAGUAUAUAUCGACGUAGGGAUUAUUUACCGUUAAUACCUACAGCCGAUCGAAUAGAUUUAGUUCUUUCUUGCUUGUUUAUGA
Sequence
(OSA-LNCN4770.2):
CUCCCCUCCACACAACCGAGCUCUCUGAGCUCUCCUCUUCUCUCUCUCUCCCAUGCUAGCCAUCGGUUGAUCUCCCUCACCGGAGCAUUGCCGACCAAAUACUCGCGCCAAUAGCUUCGCCUCAAUGAAGUGAAUCCAUUUUCCUACUUUCCCCUCUUCCCUACCCAUUCCAUGAUCAAGCCACCACAGCUACCUCUUUUGCUGCCGGAGUUGAGCUCUUGCCCUCGCCGUUCCGGCCUCCUCUCUCAGUGCUUGUGUAUGAAGCCACCCUCCCUAGAUGCGCGUCGCUCGGGAACAUCAUCUGCCGCCGACGCUACCUUUCCCUGUCCACCGGAGCACCAGCGCCCUUCUCUCCCUCCUCUCAGUUCCCUGGCAAGAAGCAGAGAAGAGGAUGAUGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCUGACAACCCCUAAAGAGCCGCCGGUUGGAACUUUACGCCUUUCAUGGGGAUGUUUGCCCGGUCUACUGGCCCUUACAUCAGACUGUUGGUUGUAAAGCCCAGCAAGGUCAAAUGUGCUGCUCCUAGCACCCCACGCCUCUAUGCGUACUGUGGUUGGAGCUUUACUAUUCCCUCGACCUCCACAGCACGCCGCACAGUUAGCUCUCGGGCUAUGUGUGAUCCAAGCCGCUCCGUCACCACCCACGGUUGUCGGAGUAACACUUCCGCCUCGCUAAACCUGCAUGAGCCUCCUACUUCUCUAGUCGAUAUGUUGUCUGUUGACACCGGCUAGAGAAGUGUUAACGAUCAAAUUUGGUAGUUUUAGUAUCGGAGAUGGAGAUAAAACCGAAGCGGAAUCUAAGGAUGGAUCGUUCCGGGAACAGAGCAAGAAUCAGCUGAAGUCCGAAUCGGCUGCAACCAGAAUCGACAGAGUUCGAGUCGGACAAGGUUAGCCGAUUAAACCGAUUCCGACAAUGUAACUCGAUACACGUUGUCGGGUUGAGUUAAUGUGCUUCAUGUGGAUUGCCAUGCACGGAUUAAGUCCUGAGAAGGCAAUUGUAUCUAUCAAUUAGGAUAUUUUAUGUAAUUUCCUUAGAGAUAAGUUUGGGCAAAAGUCUGCCGCAAAGACUUAUGGUAUCUUAGAGUUUGUUAGAGAUAAGAGUCGUGUCUGACAUGGACAUAUUUUGUAAUCUCGGGUAUAAAUAGACCCCGAGCCCCAUGUAAUCAAUCUAACACACACGUUCAAUACAAUCUCGGCGCACCACCACCCUUUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.93%
ME_num:
MEP:
37.2%
HE_num:
HEP:
29.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.86
Avg Expression:
31.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.43824943578 | 3.83848389865379e-92 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.86846657737539 | 5.61445367269358e-123 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.61123272026086 | 1.39638059128069e-161 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.11276248449415 | 1.61963981515072e-131 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.76448129931022 | 1.84524507023489e-111 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.45169178298227 | 4.5680001912445e-28 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 4.53517367354567 | 3.13206341043719e-64 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 6.32556549523653 | 3.08308130354258e-137 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.18775997891163 | 2.32209120572727e-26 |
| 10 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.87838019703946 | 0.000113438344259993 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.6496587791295 | 4.68220085602196e-280 |
| 12 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.49102436080949 | 0.00909592537048274 |
| 13 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 6.61678844324367 | 0.0266756730298191 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.22496986352781 | 3.3271636357599e-15 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.66898162600399 | 0.000249046925463749 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.22354523112597 | 5.03294670348487e-06 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 7.88223370804316 | 6.86379801186092e-201 |
| 18 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.43872953711256 | 2.18687114847699e-286 |
| 19 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 2.90389623778721 | 0.00194420252321841 |
| 20 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.03018509480322 | 2.24355782772222e-06 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.29892542075886 | 9.56632112558907e-12 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.86520957214431 | 2.79845511315127e-81 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.72728199332422 | 1.65644183094928e-05 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.7870199922641 | 2.72911134962896e-12 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.5383002261601 | 7.20370906752938e-10 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.11433621369478 | 0.000114143304893183 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.27742003750302 | 0.0104663253197315 |
| 28 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.90839728320933 | 8.1088751416828e-64 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.86831960403934 | 0.000191992142894411 |
| 30 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.90791386096445 | 6.63797072174106e-64 |
| 31 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.90782286501176 | 8.61817522478958e-64 |
| 32 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.62446856788926 | 0.0177433955764761 |
| 33 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.54848738366942 | 1.89572127168672e-08 |
| 34 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.53456307282985 | 0.0414049805184528 |
| 35 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.97356418949553 | 1.76151435264835e-38 |
| 36 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.5426871255161 | 0.000886381857202508 |
| 37 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.0526465199185 | 1.93317678944991e-10 |
| 38 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 3.16304139332936 | 8.35413418947804e-19 |