Chr:
Chr4
Start:
28530439
End:
28538520
Strand:
-
Ref_name:
OSA-LNCN4765
Sequence
(OSA-LNCN4765.2):
GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGCACUUUCUGGUUGUGGAAGAAUGAGAGUUCUUGAAAUGGUUGGCUUGCACGAUAGUGAUCUUGAUCCCUGAGGCCCCAUAUAAAAAUGCAGGAAUUUUACUGCACUUUUGCGGAAAUUGCACAUGAUCGCGAGACAACUCCAUCCCGACAGAAAAUGAAAAAGGUGCAUGCCCUUCUUGCGGGCGUCUUCAGAAAGGUCAAAAAUAACAGGAGGAGGAACAAACAUCUUUGUCAAGCAAACAGGUCAACACGAACUGAUCGAGCUGAUCAAAGUGGGGUUGGGGU
Sequence
(OSA-LNCN4765.1):
GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGCAGGCUAGCUCUGAGAUGUCAUGUCUCACCAUCGUCCCAAAACCGGAAUCUUCCAGCCAUGAAAAGCACUAGCGAGAGAGGGAGAGAGGAGAGGAGCUAGAGAAGCCAUGGAGGAAGGGAAUAUCAUACUACUUCCAUCCAUCCACUGAGGUGAUCUAUGUUACGUCUGCCUGUCAGCACUUUCUGGUUGUGGAAGAAUGAGAGUUCUUGAAAUGGUUGGCUUGCACGAUAGUGAUCUUGAUCCCUGAGGCCCCAUAUAAAAAUGCAGGAAUUUUACUGCACUUUUGCGGAAAUUGCACAUGAUCGCGAGACAACUCCAUCCCGACAGAAAAUGAAAAAGGUGCAUGCCCUUCUUGCGGGCGUCUUCAGAAAGGUCAAAAAUAACAGGAGGAGGAACAAACAUCUUUGUCAAGCAAACAGGUCAACACGAACUGAUCGAGCUGAUCAAAGUGGGGUUGGGGUGAAACGCAAGAAACUAGUAGUACUAGAAAUUUUAGCCAGUCAGAUUGGAC
Sequence
(OSA-LNCN4765.3):
GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGGCUAGCUCUGAGAUGUCAUGUCUCACCAUCGUCCCAAAACCGGAAUCUUCCAGCCAUGAAAAGCACUAGCGAGAGAGGGAGAGAGGAGAGGAGCUAGAGAAGCCAUGGAGGAAGGGAAUAUGUAUGUAUGACAAACACCCCACUCUCUAAAGAAACUUUACCCACAGGCACACACAGUCUCCUCUCUCUCAUACUCAAGUCUCUCUCUCUCAUCACAUGGUAUAUUAUUAUAUCAUAUGUUUGGCCAGCAUGCCAUUUGUACCACCUUUUAUUGUUUUUGUAAACUAAAAAGGUACAAAUGCUACCCUCUCUCUUCACCGUCAUGCUUCUUGCAUCUCACUGAUCUCUGGGAUGUCCCUCUUCCUUUCAUGUCAAGUGGGUAAGAAAUGCAACUUUUUUACUUGCCCAGUUUCACCUGCCCACACCAAAAAGUUGUUACCCAAUGAUUCUUUCUCCUGUUCUGUGCCAUGGUCUCUGUGUUUAUCUUGUUAAUGGAGUACUAUACAAUGGCUGAAUGGCACACACCAGCUCUUGAUCACCAAAAAGUUGUCCCACAAUGAUUCUUCUCAAUGUAGAAGUACUCAUACAAUGACACACACACAACCUCAUCACCACCAUGUGGUAUGAUCCUUCCCCUGGAGAGGAGUUGCAUGGAGGGGCCCACAAAAAAACAUUCUCCUAGGGAUGAGGGGCGUGAGGAAUAAUAACAUUCACCGCAUUCUUGAAGCAUUGGCCACCCUAUUAAACAAACGACCCACUGCCCAGAUUUUAAUUUGCUCCAGGGGGGAGGAUGAUGAUGUGCUGCAUUUGGCUCUGUGCAACUACUAAAUGACAAAGGAAUUAGAACCACUGUUAGCUUCUUGAUAGUAGCAUAUCAACGUUAAUGGUGAGCUAUAAGCUAACUAUAAACUUACGUGGAGAAAAGAUUUAACAAAAACUAGAGUAUAUUGGUUCCCAUGCAAAAGCUAGUUCAAGACAUACUUCUAAACAAAUACAUUAAAUGUAUAUGUGACGGAAAGAGAGAGGAGAAGAAAAAAAAUAAAGAUAACCUUAUGGCUAAUAUUAUAUAUAUAUAUAUAUAUAUAUAUAUGUUAGUUUUAAGAUGGGCUAAUAGCUAAUAGUAAGCUCUACUAUUAAACUUGCUCUAAGAUGUGCUUUUGGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.87%
ME_num:
MEP:
80.69%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.60
Avg Expression:
2.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.48331675161886 | 0.0383567985975934 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.46800090420448 | 0.000426741072431999 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.14172178460996 | 0.0021611840725504 |
4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.02714048101286 | 0.000447108707878281 |
5 | 9311 // leaf // control--/--9311 // leaf // salt | -1.62878653553031 | 0.00375287404210096 |
6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.4219952413903 | 0.0367243091786212 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.9103054729239 | 0.00251040996545414 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.15956194768064 | 0.00021937860801179 |
9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.77579539046404 | 0.0012658452820178 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.99161739607097 | 0.00403530857948677 |
11 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.805004613554 | 1.97883898610495e-05 |
12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.75078378893544 | 0.00207282294048052 |
13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.88458870338036 | 0.00170552985526473 |