OSA-LNCN4765


Function Link


Basic Info

Chr:

Chr4

Start:

28530439

End:

28538520

Strand:

-

Ref_name:

OSA-LNCN4765

Sequence
(OSA-LNCN4765.2):

GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGCACUUUCUGGUUGUGGAAGAAUGAGAGUUCUUGAAAUGGUUGGCUUGCACGAUAGUGAUCUUGAUCCCUGAGGCCCCAUAUAAAAAUGCAGGAAUUUUACUGCACUUUUGCGGAAAUUGCACAUGAUCGCGAGACAACUCCAUCCCGACAGAAAAUGAAAAAGGUGCAUGCCCUUCUUGCGGGCGUCUUCAGAAAGGUCAAAAAUAACAGGAGGAGGAACAAACAUCUUUGUCAAGCAAACAGGUCAACACGAACUGAUCGAGCUGAUCAAAGUGGGGUUGGGGU

Sequence
(OSA-LNCN4765.1):

GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGCAGGCUAGCUCUGAGAUGUCAUGUCUCACCAUCGUCCCAAAACCGGAAUCUUCCAGCCAUGAAAAGCACUAGCGAGAGAGGGAGAGAGGAGAGGAGCUAGAGAAGCCAUGGAGGAAGGGAAUAUCAUACUACUUCCAUCCAUCCACUGAGGUGAUCUAUGUUACGUCUGCCUGUCAGCACUUUCUGGUUGUGGAAGAAUGAGAGUUCUUGAAAUGGUUGGCUUGCACGAUAGUGAUCUUGAUCCCUGAGGCCCCAUAUAAAAAUGCAGGAAUUUUACUGCACUUUUGCGGAAAUUGCACAUGAUCGCGAGACAACUCCAUCCCGACAGAAAAUGAAAAAGGUGCAUGCCCUUCUUGCGGGCGUCUUCAGAAAGGUCAAAAAUAACAGGAGGAGGAACAAACAUCUUUGUCAAGCAAACAGGUCAACACGAACUGAUCGAGCUGAUCAAAGUGGGGUUGGGGUGAAACGCAAGAAACUAGUAGUACUAGAAAUUUUAGCCAGUCAGAUUGGAC

Sequence
(OSA-LNCN4765.3):

GGCCAAGAUAGAUAGGGAUGGCUGCUAAAUUGAGGUAAGUUUGCCCUUUUUCAAUUGUUUAUAUACAUCCAGUUCUACAUACAAAUGUACACUAGUAAUUAAGUUAGCAAAAAUCUGUUAUUCUACCCGUGAUGUUAAAAACCCGUUAUUCUAUAUUUCUACCCAUGAUGUAAUUCUGACUGCGCUCUCUUUCCACAAGUUUUUUUCUGACCCUGCCCCUGUUGCUGCUCCCACCGUUCAUUUCCAAGGACAAUGUCCAACGGAUCCCACUCCGAUUGAAAUCUCUGAGUCUCAUAUGGGCCCAUAUAUCCCAUCUCCCGGUUACUGUUCAAGUUUAACACGACGAUGGUAGUACAACCACCUUCGGUGUGGGCAUAUGCACUGCAAUCAGAGAAGAAUUACACGAGCCACAACUGUACACUGAAAACAAAGAGGCUGGUGCCCUGUCGCACAACAAGAAAAGGCACAGCCGCUGAGGUGGGGGAGAAGUAGAAGAAGAAGAAAGAAAGAAAAAAAAUGGAAAACGGAAAAAAGGUGACACCGCACAGUGACGCCCCCAUGGAAUUAUAAAAAGAUGGCCGCGGUUGGCCGCACGUGCCGCGCCGUCCUACGCACGCGCGACGCGAGAGCCCCCACAAACCGCCAUUCCCAGGGCUUCCACCGGUGGCUUUCCUCCUCUUUUCUUCGGAAUCCCUGACCGAACGAGCAUCCAUCCAUCCAUUCACUCGGUCGCAUACCCCUGAUAAUAAUACUCGCGUGUGCCCUGUGCUUGAGCAAGAAGAACAUCAUCAUCAUCAGCGGCCGAGCUUAAUUUGACAGAAAUAUAGUAUAUAGCGCUUCAAAGUUUUGGAGUAGUAGCUCAUCUCGUCUCUGCCGAGUUUCUGGUAGAGCUGGAGGAGCGGAGGAGUAGUAGCGAAAUAUAUAUAAUAAAAGAAUCCACUAGCAGCUUGGCUAUUUCAGCAAAACGUAUGUGGGUAGAGAGAGAGAGAGAGAGGAGGGUGCAGAGAUAGGGAGGAGGCAUAAUUCCACUCACUGCCCCAACCACAGGACAUUCUCUUCUCUCUCUCCCUUCUGCUCAAGAAAUCCACCAGCUGCUGCAUCAGGAGGUGGAGCUCGCUCGUCGUCUUCGUCUUCGUUGCGCUUCGUCUCCUCAGGUGCCCGGAGGAGCAAGAAUUGUUGGGGGGGCAGCGAGGUAGACGCAGUUGGAGAGCCCUCUUGCAUGGAUGCAGCCCACUGGCACCAGGCUAGCUCUGAGAUGUCAUGUCUCACCAUCGUCCCAAAACCGGAAUCUUCCAGCCAUGAAAAGCACUAGCGAGAGAGGGAGAGAGGAGAGGAGCUAGAGAAGCCAUGGAGGAAGGGAAUAUGUAUGUAUGACAAACACCCCACUCUCUAAAGAAACUUUACCCACAGGCACACACAGUCUCCUCUCUCUCAUACUCAAGUCUCUCUCUCUCAUCACAUGGUAUAUUAUUAUAUCAUAUGUUUGGCCAGCAUGCCAUUUGUACCACCUUUUAUUGUUUUUGUAAACUAAAAAGGUACAAAUGCUACCCUCUCUCUUCACCGUCAUGCUUCUUGCAUCUCACUGAUCUCUGGGAUGUCCCUCUUCCUUUCAUGUCAAGUGGGUAAGAAAUGCAACUUUUUUACUUGCCCAGUUUCACCUGCCCACACCAAAAAGUUGUUACCCAAUGAUUCUUUCUCCUGUUCUGUGCCAUGGUCUCUGUGUUUAUCUUGUUAAUGGAGUACUAUACAAUGGCUGAAUGGCACACACCAGCUCUUGAUCACCAAAAAGUUGUCCCACAAUGAUUCUUCUCAAUGUAGAAGUACUCAUACAAUGACACACACACAACCUCAUCACCACCAUGUGGUAUGAUCCUUCCCCUGGAGAGGAGUUGCAUGGAGGGGCCCACAAAAAAACAUUCUCCUAGGGAUGAGGGGCGUGAGGAAUAAUAACAUUCACCGCAUUCUUGAAGCAUUGGCCACCCUAUUAAACAAACGACCCACUGCCCAGAUUUUAAUUUGCUCCAGGGGGGAGGAUGAUGAUGUGCUGCAUUUGGCUCUGUGCAACUACUAAAUGACAAAGGAAUUAGAACCACUGUUAGCUUCUUGAUAGUAGCAUAUCAACGUUAAUGGUGAGCUAUAAGCUAACUAUAAACUUACGUGGAGAAAAGAUUUAACAAAAACUAGAGUAUAUUGGUUCCCAUGCAAAAGCUAGUUCAAGACAUACUUCUAAACAAAUACAUUAAAUGUAUAUGUGACGGAAAGAGAGAGGAGAAGAAAAAAAAUAAAGAUAACCUUAUGGCUAAUAUUAUAUAUAUAUAUAUAUAUAUAUAUAUGUUAGUUUUAAGAUGGGCUAAUAGCUAAUAGUAAGCUCUACUAUUAAACUUGCUCUAAGAUGUGCUUUUGGGAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

83

LEP:

16.87%

ME_num:

397

MEP:

80.69%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.60

Avg Expression:

2.32

Tip: OSA-LNCN4765 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.483316751618860.0383567985975934
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.468000904204480.000426741072431999
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.141721784609960.0021611840725504
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.027140481012860.000447108707878281
59311 // leaf // control--/--9311 // leaf // salt-1.628786535530310.00375287404210096
6Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl-1.42199524139030.0367243091786212
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.91030547292390.00251040996545414
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.159561947680640.00021937860801179
9Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.775795390464040.0012658452820178
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.991617396070970.00403530857948677
119L136 // leaf // control--/--9L136 // leaf // salt-1.8050046135541.97883898610495e-05
12Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.750783788935440.00207282294048052
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.884588703380360.00170552985526473