OSA-LNCN4761


Function Link


Basic Info

Chr:

Chr4

Start:

28268695

End:

28272454

Strand:

+

Ref_name:

OSA-LNCN4761

Sequence
(OSA-LNCN4761.1):

UUCGGAAUUAAAAAAAAGAAAUAUUAAAAAACGAGUUAAUAUAUAUAAUUUACAAAUAACUAAAAUUUGAUAUUAAAAAUAAUUAAUAACUAACACGUAUAUAAAAUACAAUAUGAAUUUUACAGAUUAGUAGUUUUGUAAAGUUAUUACAAAAUUUAAAAUUUUGCUGUCGUUUUAAUAUAUUUGAAUAAUAUAAAGAAAAAAACAUACUAUAUGCUAUUAUAUGAGAGAAAAUAUAAUGAUGCUAGCUGCGCAAUCUGCGCGGGCCACCAUGCUAGUUGUAUAUAGUAUACAUGAAAUCCAUUUCUGUUUAAAAUGGAAAGUACAAGUUGUAUAUGAAAUUAAUUCUAUACUUAAAAUCUAAUAGUGUAGAUUGAUCGAUAUAGUCCUAUACAUGAAUACAGUUAAAUCUAUAUUAACAUAAGCUGUAUAUGAAAUCAAAUGCUACAUUUAAAAUAUAUUUGUGUGAAAAAAUACUAUUGUAUCUUUAGAAAUAAAAUUUGUGAACUGUAUGAUGAAUCUAAUUCUAUCUCAAAAUCUAGCAUCACCAAAAAUUGCAUAGGGGUAAUCCCCUAGGUUUAUAUGAAUUUUACAUGAAUUAGUACUCCAUAGCUCAAUCCCCUAUAAAAUUUCCGUAAAAUUAUUUUACUCUUUAAACAAGUAAUUUCUUCGCUCUCAGACCCGUUGACCCCGAUAUGGCAAGUCUCAAAUUACCUAGUCUGAACAUAUUUUGACGUACCUCCCGUGGCAAGUCUCAAACGAACACACCGUGGGUCAAGAACCUCCUAAAGGUCAUUCGCACAUCACAGCUAAGGGUGUGUUUGGUUCUCGGAAGGUUGGAUGGGAUAUGGUGAUUCAUAUUUUGCUGGAUAUGAUGAUCCAGUUUUUUUUUGGUGGAGUGAAUAUGACGAUCCAGUUUUUUAUUUGGUUGUAGGGAUGAAAGUGGAUAUGGUGAUCCAUUUUUUUAUUUGGUUGGGGGAGUGGGAUAGAUGAGUGGUUGCAAUCACCCGGUGAGUAUAACCCUCCAAAUUCUCACCCAAAAAAUAUCAAUCUACUAAAAAAAUCUAAAUAGAAAUAAAAAAGCAGAAAGAAAUAAAAGGGAAGGAAAAAAAAAGGAAAAAAAUCCUUCUCGGAAUCGCCGGCCGCCCCUCGCCGAAGGUCUUCGCCAGCAACCCCGCCGCCGCGCUUCCUCUCUCUCCCGCCGCCGCCGCCUCACCUCCUCUCUCCCCGGCCACCGCCGCUCGCCCUCUCUCACUGGCGCUCCCCAGAUCCGGUCGUCGCCGGCUCGCCUCCUCUCUCGUUGCCGAGCUCGCCUUGUCCCGCCGGCCGCAGGCGCCGCCGCCUCCCGCCGACGCGCUCUCGGCGCCCGUACCGUCGUCGUAGUCGGGUCCGCAUCGUCGUCGUCGUCGGGUCUGCACCGUCGUCGUCGUCGGGUCCGCGUCGUUGUCGUCACCGGCAGGCGUCUCCGAGCUCGCGCCUCCCCCGCCGGCGGCCGCCUACUCCCGCUGGCCGCCUCCUCCCGCCAGCCGCCGCCUCCCGCCGACGCGGCUAUCGCCGCCCGCACCGUCGUCGUCGUCGCCGGCUUGCCUCCUCUCUCGUCGCCGCGCCAGCGCCAGCCGCCGCGCCCGCAUCCCGCCGUCCCGCGCCAGCGCCCGGGGUGACGCGAGUCACGGGACCGCCUCCCUCGCUCGCCCAGCUUGCCCGGGCGCUUGGGCGGCUAGAUCCGGACAAAUCGGCCGGAUCCCUCUAUCCAGCAUCUGGGGGAAUAUUCCUUCUCAGGCCGCCCCAUCCCACCCCUGCCCAGCAACCAAACACCCACAAAAAAUAGACGGCCAUGUCCUAUCCACCCAUAUCCCUCUAUCCAAACACACCCUAUAAGCAUCCCCGGAUGAAAGCCUACCCCCACUACUAAGUAACGUUAACAAAUUACGAGUGCUUUUGCACUUUUGCUGCACAGGUUUGAGCUUUAACCUCAUUCCGGCCGAUUGGAUUUCGUGAAAAGUUUACGGCUUUGAUGGAUCGAGAUAAAAAAGAAAAAGGGAGUUGGGUUCUCAACCGCAUGAAACGAACAUAACCACGCCUGUUUGGAGUAUUAAAAUCGUCUUAACGUUGAUUUUUUCACUUACGAUGGAGGUCUUCAGGUUGAUUAAUAUAUUCCCCGCGCACGCUGACGCGAUCUCUAUACGCGGUUCAACUGGUAACAAUAACAUCACGCGGACAGCGGACUACACGUAUACACGGACACGGGUUGUUUGUGUUGCAGACUUGCAGCCGGCUGGGCCUGGGCGUAUAUUAAGUGCAAGUUUUAAUUAAUACGGAGUGAUAUAGAUAACUACCUUUUUCUUAUACUAAAGCUAAUAUACUAACUCCAUUCCAUAAUAAUUAUAUUUCUAGAAUUUAAAUUUCCAAAAAUAAUUAUCACAAUAGAAUAUUAAUUAUCCCAUCAAUCACUUCUUAUUUAAAUUUCUUUCUAUUCUACCCUUAACCACUAGUCUUUCUUCUCAAACCUUAGAAUUACAAUUAUUUUAAACAAAUAUAGUAUAAUAGGUUGGUUCUUUUCUUUUUCUCUCAUUAUAAAUUCAAUGUAAGUAUCUUGGAGCAUGUAUAUAUAUCUAGCUUUUCAUAAGAGCCAACGCUUCUCAUCUUUUUUUUUCCAUAUAAAUUUAUAGUUGACUAUUAUUCUUACUCUAAUGAAACAGGUGAUUUAUGCCCGGUGAAUCCGUCGUUUUUGUCAUUCAGAGUAUCCUGCUUAUUUGAUCAGCCUCGUGCUCAUAAUUGUCGUGUGUUUGUUUUUUUUCUUUUUGGGUCGUGUCGUUUUACUUGCCUCUAUCUUUUUCGUACUCGCACUUCACUACUGCUGGCUCCUUCGGAUACACAUCAUAAAACGGUUUUGACUUUUUUUACAUGUUAACUUUUCCAGGAUUGACUAUAUUUAAUAAAAAAACAUAGCAACAUCUAUAAUACUAAAUUAUUUUUAUUAAAACUAAUAGUUAUUUUGUGUUAAAAAUAUUAAUGUAUUUGUUUAUAAACUUAGUUAAAGUUAAUCCGUUUAGAAAAAAAUAAAAUAUCUUAUAAUAUGAAUUAGAGGAGUACUAUACUAUCGAUGUAUGUGUGACAUUUGAGCUCUAGG

Sequence
(OSA-LNCN4761.2):

UCCAUAGCUCAAUCCCCUAUAAAAUUUCCGUAAAAUUAUUUUACUCUUUAAACAAGUAAUUUCUUCGCUCUCAGACCCGUUGACCCCGAUAUGGCAAGUCUCAAAUUACCUAGUCUGAACAUAUUUUGACGUACCUCCCGUGGCAAGUCUCAAACGAACACACCGUGGGUCAAGAACCUCCUAAAGGUCAUUCGCACAUCACAGCUAAGGGUGUGUUUGGUUCUCGGAAGGUUGGAUGGGAUAUGGUGAUUCAUAUUUUGCUGGAUAUGAUGAUCCAGUUUUUUUUUGGUGGAGUGAAUAUGACGAUCCAGUUUUUUAUUUGGUUGUAGGGAUGAAAGUGGAUAUGGUGAUCCAUUUUUUUAUUUGGUUGGGGGAGUGGGAUAGAUGAGUGGUUGCAAUCACCCGGUGAGUAUAACCCUCCAAAUUCUCACCCAAAAAAUAUCAAUCUACUAAAAAAAUCUAAAUAGAAAUAAAAAAGCAGAAAGAAAUAAAAGGGAAGGAAAAAAAAAGGAAAAAAAUCCUUCUCGGAAUCGCCGGCCGCCCCUCGCCGAAGGUCUUCGCCAGCAACCCCGCCGCCGCGCUUCCUCUCUCUCCCGCCGCCGCCGCCUCACCUCCUCUCUCCCCGGCCACCGCCGCUCGCCCUCUCUCACUGGCGCUCCCCAGAUCCGGUCGUCGCCGGCUCGCCUCCUCUCUCGUUGCCGAGCUCGCCUUGUCCCGCCGGCCGCAGGCGCCGCCGCCUCCCGCCGACGCGCUCUCGGCGCCCGUACCGUCGUCGUAGUCGGGUCCGCAUCGUCGUCGUCGUCGGGUCUGCACCGUCGUCGUCGUCGGGUCCGCGUCGUUGUCGUCACCGGCAGGCGUCUCCGAGCUCGCGCCUCCCCCGCCGGCGGCCGCCUACUCCCGCUGGCCGCCUCCUCCCGCCAGCCGCCGCCUCCCGCCGACGCGGCUAUCGCCGCCCGCACCGUCGUCGUCGUCGCCGGCUUGCCUCCUCUCUCGUCGCCGCGCCAGCGCCAGCCGCCGCGCCCGCAUCCCGCCGUCCCGCGCCAGCGCCCGGGGUGACGCGAGUCACGGGACCGCCUCCCUCGCUCGCCCAGCUUGCCCGGGCGCUUGGGCGGCUAGAUCCGGACAAAUCGGCCGGAUCCCUCUAUCCAGCAUCUGGGGGAAUAUUCCUUCUCAGGCCGCCCCAUCCCACCCCUGCCCAGCAACCAAACACCCACAAAAAAUAGACGGCCAUGUCCUAUCCACCCAUAUCCCUCUAUCCAAACACACCCUAUAAGCAUCCCCGGAUGAAAGCCUACCCCCACUACUAAGUAACGUUAACAAAUUACGAGUGCUUUUGCACUUUUGCUGCACAGGUUUGAGCUUUAACCUCAUUCCGGCCGAUUGGAUUUCGUGAAAAGUUUACGGCUUUGAUGGAUCGAGAUAAAAAAGAAAAAGGUGAUUUAUGCCCGGUGAAUCCGUCGUUUUUGUCAUUCAGAGUAUCCUGCUUAUUUGAUCAGCCUCGUGCUCAUAAUUGUCGUGUGUUUGUUUUUUUUCUUUUUGGGUCGUGUCGUUUUACUUGCCUCUAUCUUUUUCGUACUCGCACUUCACUACUGCUGGCUCCUUCGGAUACACAUCAUAAAACGGUUUUGACUUUUUUUACAUGUUAACUUUUCCAGGAUUGACUAUAUUUAAUAAAAAAACAUAGCAACAUCUAUAAUACUAAAUUAUUUUUAUUAAAACUAAUAGUUAUUUUGUGUUAAAAAUAUUAAUGUAUUUGUUUAUAAACUUAGUUAAAGUUAAUCCGUUUAGAAAAAAAUAAAAUAUCUUAUAAUAUGAAUUAGAGGAGUACUAUACUAUCGAUGUAUGUGUGACAUUUGAGCUCUAGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

232

LEP:

47.15%

ME_num:

254

MEP:

51.63%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.71

Avg Expression:

2.28

Tip: OSA-LNCN4761 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.207752037066771.91798704032328e-05
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.003760349484882.36672411419752e-07