Chr:
Chr4
Start:
26902128
End:
26902889
Strand:
-
Ref_name:
OSA-LNCN4746
Sequence
(OSA-LNCN4746.1):
CUAGGAUCGGAAAGAAUAGCCCCUUUUGUUACUGCCACUUGAUCAUCUGGUAUUCUGAUUAAUGCUGAUGUCCCACCAAAGUGAGUCUAAUGAUACUGUCAUUUGCAUGCAGUCCACCAGAAAAGCCGAGGAAAAUGACUGAACUGUGUCGUUGGAGCUUCCUGCAUAUAUGACACUGACACUGUAACUUAGAUAUAAGUCUGUAAGUUAUGGGGGGUUGUUGGCUUACAGGCAGUAGUCUAUAGCCAGCAAGCUAAAUUUUGGUUUGUCAGUAGCGUGGCUGCCUUCAAUCAAGUGAUUGCUCUCGUCCUUAGCUGAGCAAGCUGAGCAAUUUGAUCGAUAGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.59%
ME_num:
MEP:
38.01%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.76
Avg Expression:
1.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.16493481467665 | 0.0153171832822037 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.81224725280721 | 0.0474078163896347 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.84446012409901 | 0.0208215335567059 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.42574881240821 | 0.0084093991024054 |
| 5 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.62169917912634 | 0.00460312866840457 |