Chr:
Chr4
Start:
26721684
End:
26725441
Strand:
+
Ref_name:
OSA-LNCN4739
Sequence
(OSA-LNCN4739.1):
GCAUGAGAUUUCUGUAGGGUUAGUUAGGUUGUUUUAAGUCUUUUUAGCAAAUUUGAAACUAUUUUUUUCACCUAAAUUACUUCUUCAAUUUAUAAUUCGAUUUCACUGUUAUAUUCGUUGUAAUUAAAUCUUUACAACAAGAUCAGACAUGAUUAUAUUCCAACGGAAAAAAAAUAUUUAGCUCUUUUUUCAAUAGAUAUUUUGGGCCUGUUUGGCACAGCUCCAGCUCCACCCCUCCUGGUAGGGGUGAAAACGGUAAGGAAUUUUUCCGGAUUCCGUACCUAUUUUCAGAAACGGAAUCAGCCGGUCGGAAAAUUUUCAGAAUUUCUCAGAAACGGAAUCGAAAACGGAAAUAUUUUCUCGGAAACGGAAUCAAAUAUGAUAAUCGCAGUUUGCGUCGGAACUCGGAAUCGGUCGGAAACAUUCCGGAAAAUUUGUCGAAAUUUCCGAAGUUAAAAAGGCCCAUCCAAUCAAUAGUCCAUAAUCCCUCCCCAAGUCCCCAGCCGGCCCAACCCAAGCUGCUAACCCAAGAGAAGAGAGUGGAGAGAGAGAAGUCAGACAGAUCGGGAGGGAGGCCGGGAGCGGCGCAUCGCCAUCCAGAGGCGGCGGCGGAGCGGCGCAUCCAGAGCGCGCCACCACCCACCGCCGGCCUGCCGUCCUCGCUUCCUUGGCUCCCCGCGACCUCGCCCCCGCCGUCUCGCAUCUCGCGCCGCCCUUCCUCUUCGCUCCGUCCUCGCCCCCACCAUCUCGCGGCGCCGUCCCGCCGCCUCUCGCCUUUUCGCCGCUGCCACCACCACCGACGAGGCGACGACGACGCCACAGCCACACCACCGACGCCGGCCAUACCGACGACGACGCGACAUCGACGACGAGACCACAGGCCACAGCCACACCACACCGACGACAUCUCAAGCCCCACUGGCUUCCUCACCGCCAUCGAUGCCGAGCCGACGCCAACGCCUCCAGCAGCCUAGCGGCAACAGUAAGCAGGUAGCUCAUUGUAUCUUUGAUUGGGCAAUUUUACAAAACAAGGAGGAAGAAACAAGAAGACUGCAGGAGGGGGGCAGACUGCUAAAACGAGUGGUAAAUGAGGUUUAUAGCACCAGGCAUGGUUGGGGCUCCAAGACAGGAAGAUAACCAUGGUGGUAAAUGAGUCGAGCAAUUUCUUAGCGCAGCUUUGAUUAACCCUGGGGAUUUUCCUUGUGGGAGAAAUUAAAACUUUGUAGCCAACCUGAACACUGCCACAGUGCCACCGAGCACCUGGUGUGCAAGUAUGUCUUAUUCUUUUUGUUAGCCUCUCUUCUUACUUUCUUAGCCAUGGUGGGAUGGCGCGCCUGGUGAGCGAAGAAAGUUGAUCUGCUGCCUAGAACCGGAUACUAUAAUUCUAUCAUUCCUCUUAAUGGAAAUGGGGGAGCUCCUGCUCUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
55.28%
HE_num:
HEP:
18.7%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.81
Avg Expression:
11.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.9848892127539 | 0.0234201017786257 |
2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.30535606819702 | 0.0148278750033278 |
3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.04557197728059 | 7.77414055717085e-22 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.67907437934755 | 0.000429163965200371 |