Chr:
Chr4
Start:
26685560
End:
26689106
Strand:
+
Ref_name:
OSA-LNCN4738
Sequence
(OSA-LNCN4738.1):
CGAAAAAGUAGUUCGAAAAUAAGUGAACGGGUGGCCGGAAAGAAGAAAACCAGUAGCCUACUGCUAAACACCAUUAUCGAUCAGUCAAAAGCUCCUCGCCCAUGCACAACACCAUGUCGCCAGAAGGUUCCCAUGUCAAUCUUGGCGGCUCAGGCUCUCAGCAUUUCAGUCGAGUUGCUUACCUAUCAUCGCGUCGUUUCCUGAUAUCUCCUGCUAUGCAGUUUUGCAUACUGCAUAAUGUAUUGCCGUUUAUUUUGUUUGGUUGUGCAGUUCAUGCUACUUGAUUUGAUUUCUCCAUCAUGAUCCUAGUGAUUUCUCUCCCUCUGUUAGAGUUUGUGUCGAAUAUAUGUACGUAGUCAGUUACAGUUUAGGACUUAGAGUUGUACUAGGUGUAGGACUAGAGUAUGAGUCGGACUCUAUCCUAGGUUCUCUCAUAAAUAGAGGGGCGUGCCUGUUGUAACCGUAUGGCGACUUAGCAUAGCGAGAGGGAGCGGCUGCCGGCGGCGACCGGCCGUGAGUCGUUGUAACUCUGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.63%
ME_num:
MEP:
54.47%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.88
Avg Expression:
11.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.24998496932291 | 8.97376220213311e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.34540240623686 | 0.00107966671204157 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.27732987107514 | 4.27025664036193e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.32863191996753 | 0.0102611450759483 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.23046198813476 | 0.000234830712008972 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.50408727502439 | 0.000522784431582942 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.95299671247968 | 0.00894968288873204 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.18084293751177 | 2.27074014976613e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.77252473287113 | 0.000194833283309861 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.70053804286594 | 0.00382707537845231 |
| 11 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.28152492686942 | 3.00420596814952e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.490370507546 | 0.0336903191650454 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.99801393690059 | 3.37285256092923e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.79227082955417 | 3.7907808272158e-06 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.46654222531286 | 0.000124371414341094 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.05393311538136 | 0.0461696473694973 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.24838305824849 | 0.0371277307912713 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.6985946730183 | 0.00065657584359665 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.22474385191679 | 0.00282495677274534 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.18842434642581 | 0.00012129560064381 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.50719544145569 | 1.42148697584255e-06 |