RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4735

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

26223094

End:

26224129

Strand:

.

Ref_name:

OSA-LNCN4735

Sequence
(OSA-LNCN4735.1):

GUCGGAUAAAAAAAUAUGAAGAAGUAUGAAUCACCCCCGAACUAUCGCGGUCGUCCGAAUUACCCCCUAAACCAUAAAAUCGGACAUUUUUCACCCCAAACUAUGCAAACCGGACGAAUUACCCCCCCUCGAUCCAAUCCGCGGUGGUUUUGGUCUACGUGACAGUCCAGUCAGCAUUUUAUUUUUUUAAAUAGUGGGACCCACAUGUCAUACCCCCUCUAUCUCUCUUCCUCUAUCUCUCUCUUCCUAAUCUCUAUCGGUCUCUCUGUCGUGGCGGAGGAUGCACGGUGGCGCGCGGUGUGAGACGAGGAGGGGGAACCGGACGGCGGCGUCCAGGGCGGCCGGGGGAAGCGGCGGAGGCGUCAGGGCGGGAUGGGGCAGCGGCGGCGGCGGCGACAGUGGCGUCCAUGGCGGGCUGGGGAAGCGGCCGCGGCGGCGACGACGGUGUCCAGGGUGGGUUGGGGAAGCGGCGGCGUCAGGGCGGGCUGGGGCAGCGGCGGCGGCGGCGAUGGCGGCGUCCAGGGCGGGCUGGGGAAGCUGCCGCGGCGGCGACGGCGGUGUCUAGGGUGGGUUGGGGAAGCGGCGACGACGGCGGCGUCCAGGGCGGGCGGGGAAGCGGCGGCGAUGACGGCGCCCUCUAGGUCGAACGGGGGCAGCGGCGGCGGCGCCCUCUAGGACGGGCGGUGGAAGUGACGGCGGCGAUGACGCCCUCCAGGACAGGUAGGGGACCGGCGGCGGCGGGAGCCGCCUCGCCUCGCCUCCGCCGCGCUCGCCUCCUCCGCGGCACCUCGCCGCCGCUCGCCUCCUCUGCCGCCGCCGCCUCCUCCGCCGCAUCCUCGGCCGCCGCCGCUCGCCUCCUCUGCCGCCGCUCGCUGCCUCAUCCCUCGCCGCCGCUGCCGCUCGCCGCCUCAUCCCCCACCGCCGCUCGCCGUCCCCUGCCUGCCGCUGUGAUUCGUGAGAGAGUGAGAGAAGAGAGAGAGGAAGAGUGAGAGGAGAGAGAGGAAAAAUGUAUGACAGGUGGACCCGUCUAUUUUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

398

LEP:

80.89%

ME_num:

91

MEP:

18.5%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.79

Avg Expression:

0.93

Tip: OSA-LNCN4735 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.595760154985450.0353744672326257