RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4734

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

26140935

End:

26141349

Strand:

.

Ref_name:

OSA-LNCN4734

Sequence
(OSA-LNCN4734.1):

UGCAGCAACUAGGAGCGAGCGCGGCGCGGGGGUGGAGGCGGCGGCCCGCACGGGGGCAGCGGCGGCCCGGCGCGGGGCGGCGUCAGCCUGGCGCAGUGCAAGCGGAGGCGGCAGCCAGCGCAGGGGCUCACGGCGGCUGUGUGCGGCGGCGGCGGCGGCGGUGGCUUGGUGCUGCGCGGGGGCGGUGACAGCCGGCGCGGCGCGGGGCAGAGCCGGCGGCCCGCGCGGGGGGCAGCCGCGGCCGUGUGUGGCGGCGGCGACCUGGCGUGACGACCUACAUGGGGAUGAUUUUUAGAUGUGAUAUGAUUUUUUGGAUGAUUUUGUGAUUUUAAUUUGUGGAUGAUUUUUUUGAUGUCAAUUUGUGGAUGAUUUUGUUAUGUCAAUUUGUGAAUGAUUUUGUGAUGUUGGAUCUGUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

469

LEP:

95.33%

ME_num:

22

MEP:

4.47%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.92

Avg Expression:

0.64

Tip: OSA-LNCN4734 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs4.005398395065070.0436401941770095