RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4717

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

25560291

End:

25560645

Strand:

.

Ref_name:

OSA-LNCN4717

Sequence
(OSA-LNCN4717.1):

GGAACACCUUCCCUCAAAUUUAAAAUAUCCAACGAUGGGUAAAACUUGGGGUUUUACAAAAGACUUGGAAAAACCCGACACCUGGGUCGGUGCUUGCGAACUAAAUGAAUUUCCAAAAUCGCAGACCGGGGGAUGUACCGGGAGUACGGUUUCCCGCUCUUGCACUAAGGACCGUUUCCUUGGAAUUUCAUCCGAACAUAAGACAAGUGCGACCACAUGGGCGUAAUGGGACGCCCCUGGCUGAGUAAUUAGCUAAUCGGGGGAGCCAUGAUGCCAAGAGACAUGUGGAUUCAACGGGGUGGUGCCGGGGAGAACCCCCGGGUUUCCUGGCACAGUAUGGUCUGGGACCUAACCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

474

LEP:

96.34%

ME_num:

9

MEP:

1.83%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.98

Avg Expression:

1.54

Tip: OSA-LNCN4717 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
19L136 // leaf // control--/--9L136 // leaf // salt-1.171802020116310.0274160169269063