Chr:
Chr4
Start:
25518121
End:
25518864
Strand:
.
Ref_name:
OSA-LNCN4714
Sequence
(OSA-LNCN4714.1):
GUGUAUUUCAUCUCAGCAACACCAACUUCAGUUCCGCAGAUAGCAUCCACUAGUAACAAAUAAUCAGUAAGCAUGCACCAGUAAUAAAUCUCGCAAGAAGCAUCCAUACAAAAUGCACACAAACAGGGGCAUCAAUUAUGCAAACCAUACCACUAGAAUUGACUGAUAGACAUAUUACAUCGGAACACAUAUUACAUCGGAACUUCAGUGAACAGAAACACACAAACAUCAGCUUGCUCGAAAAGAUUGGCUCCAACCAAAGCAUUCCAUCCAGUUGUGAAGGUUGCUCGCUUAUCCUUGAAUUUCAUCAGUUUCAUCCGCAUCCAACCAUCGCCGGCCUCCCGCCGAUGCAGCGCCGCCGUCGCAUCGAGGCCGUUGCCCUCCGACCCUGACGAAUCGCCACCGCCACCGAUGCAGCACAGCCGUCGCAUCCAGACAGCCAUGCCCGCCAUCGCCGACGAAUCGCCGCCGCCGCCAAUGCAGCGCAGCCGUCGCAUCCAGACUGCCGCGCCCGCCGCCGUUGACGAUUCGCCGGGGCUACCCGAUCUAGGCCACCAUCGGGUCGCCAGUCCAACCUACUCCCGCCGCCAUCUAUCGCCGCCAUGCAUUCUAGGGUUUCUUUCUCUCGCUGCUCUAGCCCGUCGAAUACGCGGCUUCUGUUCUCUCGCCAAACAGAGAAGUAAACAGAGAAGGAAGGGAUGCUGCGUGCGUGAUGCGGAAUAGACGCGAAAGUACAUAACUACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.48%
ME_num:
MEP:
5.69%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.94
Avg Expression:
2.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.96698290523663 | 0.00475585766787613 |