Chr:
Chr4
Start:
25130542
End:
25131329
Strand:
+
Ref_name:
OSA-LNCN4702
Sequence
(OSA-LNCN4702.1):
CAAACAUACUGUACGCUGAGUACAGAGAAAUAUCUUAGGCAACUAAAGAGUUCUAUAAACCAGCAUUCUAAUCGCUAGCUGCGCAACAGUAAUAUGGUAAGCUUACGCUUCACAGAGAAAUAUAGGACUGAAAAAAGAAGAAGAAAAUGUGCCUCAAGUCAACAAUGAAUUUCCUUUGAAAAUAAUAAAAUGAAAUUCCAUUACCAUCUAUAAGCACCAAAAGUAAUAAAAAAAUCUCUCAUUUACAAGAAGCAGCAUAAUAGUCCUAUAGUACUUCCUCCGUUUCACAAUGUAAGUCACUCUCAAGUUACCUAGCCACUUUGUCAUUCUCAUUCAACUUGCAAAGGGAAUUUCUAAAACUUUCAUGUCAAAUCCACCAGAAGAGAUUUCUCUGGGGAUAAAUCCAUGAGGUAGUUGACUAUAUAUAGAAUGAGAACCAAAAGAAAUGUGUGAAAUUUCAUGACAUGCACUUCUUCAGGUCCCUAAAUAUCCAUUUUUGGUAAUGAAUUUAAUGGAUUAUUCUACAUGAGUUCUGGCAGAUGUGGCACCCUUUCAACAGUCAAAUUAAAUUACCCCAAGGACUUCCCUAGAAUAAAUGUAAGACAUUUUCAUGGAAGCGUGAACUGAUAACAUAGCACUCGUAUGGAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.4%
ME_num:
MEP:
65.65%
HE_num:
HEP:
21.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.86
Avg Expression:
19.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.45819408720736 | 0.0394265166965748 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.28327984063739 | 2.69142882537311e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.52097551788891 | 4.62274624213194e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.19520240380415 | 5.54763427741757e-14 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.0553017638753 | 0.0373432941559136 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.38947838574263 | 0.00161738487770898 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.81725651644056 | 0.00269754050718128 |
| 8 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.30534540232622 | 0.00980153678665773 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.38529581165621 | 1.22413258130148e-14 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.14599016137466 | 3.68886904086058e-06 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.58858420636843 | 0.0074820193820304 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.8425453711392 | 0.000484051311363751 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.13254313845963 | 1.74260401779163e-09 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.36131610548686 | 1.90474988325849e-12 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.40202360255703 | 3.60966228172665e-17 |