Chr:
Chr4
Start:
23904399
End:
23905154
Strand:
-
Ref_name:
OSA-LNCN4682
Sequence
(OSA-LNCN4682.1):
GAUUAUUCGAUAUUUUAAUCGGAUUAUCCGAUCCGAUGUACUAUUUGGCGGAUAAUCCACAAUUUUCAUGCCACACAACUACUCAAUUUAGCCCAUUUUCCAUCGAGUGGCCCAUCUAUCAUAACCUAAUCCAACCAUCCCCCAAAUCUUUCUGACUCUCAUCUUCUCACGCGUCUCUCGAUUUCUCCAACUCCACACAUGCGCCGUUGCAGGCUGCUAGCGCCGCCACCGCUCCUCCUUCUAGCGCGCCGCCUCUGGCAUUGCUGGCACCGUCGCCUGCCGUCCCCACUCCCCUGCGUCAGCGCGUCCUCCAUCGGCCCGUCGCCUCCUCCUGUCGUCCCCAUCGCCACCAUCCACCGUCGGCGGUCGGCCCGUCGCCAGCGCCAGCGCCUAGGCGCCACCGUCACCAGCACCAUCCCCGUCGCCAGGCGCCAACGUCGGCCCGUCGCCAACGCCAUCCCCAUCGUCUGUCGUUCCGUGUCCCCAUUGCUGCUUCUUGCCGUCGUCUGUCGUGCUAUGUAUCUUGGAUUAUUUGAGCCCUUAAGCAAUUGACAAUUUGCUGGAUGUGUUAUAUUAUACAAGCUGUACUUUACCAAUUAAGCAAAAUUAUAUUAUUGUUGUGUUUUGAUUGGUUUUCCUAGAGAGCUGAGAUCAUGUUCAGAUGUUGUUUUGCCAUCGUAUUGCGGCUAAUUGUAUUGAUGCCCUCUUGUUGUAUGGAUUGAAUACAAAUUUAACAUCCGACAACUUUUUGUCCGU
Sequence
(OSA-LNCN4682.2):
GAUUAUUCGAUAUUUUAAUCGGAUUAUCCGAUCCGAUGUACUAUUUGGCGGAUAAUCCACAAUUUUCAUGCCACACAACUACUCAAUUUAGCCCAUUUUCCAUCGAGUGGCCCAUCUAUCAUAACCUAAUCCAACCAUCCCCCAAAUCUUUCUGACUCUCAUCUUCUCACGCGUCUCUCGAUUUCUCCAACUCCACACAUGCGCCGUUGCAGGCUGCUAGCGCCGCCACCGCUCCUCCUUCUAGCGCGCCGCCUCUGGCAUUGCUGGCACCGUCGCCUGCCGUCCCCACUCCCCUGCGUCAGCGCGUCCUCCAUCGGCCCGUCGCCUCCUCCUGUCGUCCCCAUCGCCACCAUCCACCGUCGGCGCCACCGUCACCAGCACCAUCCCCGUCGCCAGGCGCCAACGUCGGCCCGUCGCCAACGCCAUCCCCAUCGUCUGUCGUUCCGUGUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.4%
ME_num:
MEP:
30.89%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
3.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.02890192602123 | 0.00206612984113763 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -4.48864733915996 | 0.0233616395040899 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -8.13149395453059 | 7.91989789150442e-07 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.7248968822647 | 0.00401825431632526 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -3.40740508656011 | 0.00563082391523369 |