Chr:
Chr4
Start:
23417867
End:
23418749
Strand:
-
Ref_name:
OSA-LNCN4672
Sequence
(OSA-LNCN4672.1):
GUUUCGCUGACGUGGCAUUCUAGCCAGCAAAAAAAAAUUAAACAAAGCACGUGGGGCCCACAUAUCAGCUGCAUAUAUUAUUUUCUUCUCUUUUCUUCUCCUUUCUCUCUUCUCUCUUCUCUUCUCCCUGCUGCUACUCCCGUCCCUGCCCCGGCCGUGGGACACGAGAUCCGCCGCCGCCGCCGGAGUCCUCGUCGUCGCUGCCUGCUAGAGAGCGUGCAGUUGGGGAGGUCGCUAUUAGAAGUAUAAUCUUGUUGUUUUGUUUUCAGCAUGUUUAUUUGUAUGGUAGUAGCUGAGUAGAAGUCACAUGUAUGUGUGUUGCAUGGCAUGAGUGCUAGCUUAGUGGUUGUGCUGCAUGGCUUAGUGAGUAGAGAGAUUGGCAUUGAGUAGUGGUUGAUCGUGUUGCCAGGAGGUGAGAGUACAUCUAGCUAAUUAGUUAGCCAUGCAUGCAAAUGUGGCGAAGGGAUCAGCUCAGGAGCAAGAAGCGGUCGAAGUUUGCAUGGGCGCAUGCAUCGGAGAUUGACCAGGAUAUAUUCUGUUAGACAUGGUCGCGCUGGGCUCCUCGUCCUCCUCGUUGCAGCUGCCCCCCUCGCCGUCGUUGUCUCCGCCGGUGGCGCCGGCCGGUUCAUGUCGAUCGACGCGUCGCCGCCGCUGCUCCACCACCACUCUCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.08%
ME_num:
MEP:
17.89%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.07991815111012 | 0.00444856509570375 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.0998929611184 | 0.00283734621715487 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.52000600856553 | 1.48573325937961e-09 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.97087696661213 | 0.000230970243188572 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.97735574403127 | 0.000570860334204562 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.51575696581154 | 0.000747003832353213 |
| 7 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.5870054880095 | 0.00830367392304513 |