Chr:
Chr4
Start:
23068860
End:
23075752
Strand:
-
Ref_name:
OSA-LNCN4666
Sequence
(OSA-LNCN4666.1):
ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUACUGCACACUAACUUUUUGAUAUGUUAAGAGUUUUGAAUUUUGUUGAUAUCGAUACGUUACACUGACUAGUUCGUUGAAAUUAUCUAAAAAAAAUGUAAGGUAAAAUUAUCAUGACAUUACAACAAUUCUGAAUUUUUUAGGUCUAGUUCUAUUUCUAAAAUGACUUUUUUUGAUAUUCAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGAACUGAGUUAGUAAUUUGUGUCAGUUACAGGAAUGUACUAUUGAAAUUACAAAAUUUUUUUGGUGUAAUUCUUUAACUAAAAAAACUGUAAUAUAUUUGCAAACAUGUAAAACAGUUCAUAGUUUGCUAUAAUGAAUGUUUUUUUGCUGUUUUGUAAGUAUGUUACUCUUUUAAUAUUUUUGUUUGUAACUUUGAAUAAUUGACUUUGCUGUCCUUGGCUACUUUUGUGUGUUCUUCUUGAUCUUGUCCAGUUUGUUUGUUUGUAUGUAAAUUAGAGGACUUGUUUCUUGAAAAUGAAAAUGAAAAUGGUGGCUAAUAUCUUCACUAGGAGAAAUAUGAUGUGCAUUUUUUAUUCUUUUUUAUGUCACCAAGUUAAAUGCAUGGUUUGAAAUUAGUAUGCAUGUGUACUUUAUCAUUUUGCACUAUAAAUACUAUAUCUAUUACUAUUACUAUAGUGCAUUAAUUCAUCAAUUACAGUAAUUUAUUACUGAAAUUACACUCUUUCUUUUGUUGUAAUUCCUUAACUAAAUAACUGUAAUAUGUUUUGAAACAUGUAAAAUAAUACAUAGUUAACUGUAAUGGAUGCAUUUUUUUAAUUUGGAAUGAAGGUGUUGAACCAGAGAAUGAAAUUAAUGAUGAUGUUAAUGAAGCUGUUCAAGAUAAUGAUAAUUUUACAUCAUCUCCAAUGGUAUAAUUUUUUAACUCACUUUUUUAUUAAUUACAUCAUCUCCAAUGGUAUAAUUACAAUGUAAUUUUGUACAAUGUGUGUAUUUGAAUAGUUUUAUGCUUCAGUUGUAUAAUAGCUGAAAACCUUGAAAUUGUUAGGGUGUACAGUGUGUGCAUUUGAACAGUUUUAUGUAAUCUGCAAAUGGUUAAAUAGGGUUUUCUAAUUGAAAGAUUGAUUAUGGUGACAAUUUGCAUUGCUACCUAAUUUGUGUUGAUGACAAGAAUGUGCAAUUCUUGCUAGACCAGGUAGAAAUAUAAUUGAUGUUCUGAAUUUUUAUGAUUGAUGACAGUUACUAAUUCUAUUGAAGCAUUCAGGGUGUUUUUGAGGCUAUAAUUUUGCAAAUGCUAUAUGCUAUGUGCAAUUUAGUUAGGUAUUUUUAAUCUUUCAGUGACAAUCUUGCAUGAGUAAAGAACAAAAGUUAUUGACGAUUUCAAAAUGAGUCAUAGAGGCUGAUUUCCUGAUGCUCGUAGAUAUUUUUCAUAUUAGUUUCAAAUUGAUUUUAGAUUGUUACAUGACUAAGACAGGCUGACUUUUACUAAGUUUCAGAUUGUUCUCUGUAUUUCAAUUUACAGUACAAACAUAUUGCAGUUACAGUUUAAUAGUACUGUAAUUCUAUUAGAAAUUUACUGUAAUUUUUGAAUUUGUCCUGUUAAUUCAAAGAAUUAAGCAUUUUACUUUUUCUGGCUUUGAUUUGCAACUUUUCUUCUUUUCCUACCUUCUUGUUGAUUCUUGCAUUCUAACUUUUCUUAAGGUUUGGAUCUCUUCUGUUUUCGAUUUGAAGGCUUGUUUGAAUCUGGAUUUUGAUUCUUACUAUCUCCAUAUCCAAUAUCUUUUAUCUAGUGGAGUAAGCUUCGCUUUUCCUUCUCCUCACUUUCUUCCAUGGCGCGAGAUUGAUCUGGGAUUGGAGAUGUACUCUAUUCCAGAAAGAAGUGGUACAUCGUGAGCUGGAAAAACGUGAGCUGUAAUCACGUGCAGUAAAGUUUUCCAAUUUUGGCUUUUUGGGCUAAAUGGGCUUUUAAUUGGGCUGACCCUUUUAAUUGGGCUAUUGAAGAUUUUUUUGUGCAAAUUUGUUUUUUAGUUUUCUAUUGUUUGAUAUUAAAUUGGGCUUUUUUUUAUCUGGGUUUAUAAUUGGGCUCAAUGGGCCUUUGAUUGGGCUGAGCCGAUACGAUGGUGUCAAAAAAAAGUCAAAAAAUCUGAAGUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU
Sequence
(OSA-LNCN4666.2):
ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUGUUGAACCAGAGAAUGAAAUUAAUGAUGAUGUUAAUGAAGCUGUUCAAGAUAAUGAUAAUUUUACAUCAUCUCCAAUGUGGAGUAAGCUUCGCUUUUCCUUCUCCUCACUUUCUUCCAUGGCGCGAGAUUGAUCUGGGAUUGGAGAUGUACUCUAUUCCAGAAAGAAGUGGUACAUCGUGAGCUGGAAAAACGUGAGCUGUAAUCACGUGCAGUAAAGUUUUCCAAUUUUGGCUUUUUGGGCUAAAUGGGCUUUUAAUUGGGCUGACCCUUUUAAUUGGGCUAUUGAAGAUUUUUUUGUGC
Sequence
(OSA-LNCN4666.3):
ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGAACUGAGUUAGUAAUUUGUGUCAGUUACAGGAAUGUACUAUUGAAAUUACAAAAUUUUUUUGGUGUAAUUCUUUAACUAAAAAAACUGUAAUAUAUUUGCAAACAUGUAAAACAGUUCAUAGUUUGCUAUAAUGAAUGUUUUUUUGCUGUUUUGUAAGUAUGUUACUCUUUUAAUAUUUUUGUUUGUAACUUUGAAUAAUUGACUUUGCUGUCCUUGGCUACUUUUGUGUGUUCUUCUUGAUCUUGUCCAGUUUGUUUGUUUGUAUGUAAAUUAGAGGACUUGUUUCUUGAAAAUGAAAAUGAAAAUGGUGGCUAAUAUCUUCACUAGG
Sequence
(OSA-LNCN4666.4):
ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGGUGAUCUCCUUCUCCUCUUCUCCAGUGAAUUUAGUUCCCGUUUGUUUACUGCUUUGUUCAUCGACGCGUCGACUAUUUGUAUUUUGUAGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGA
Sequence
(OSA-LNCN4666.5):
ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.41%
ME_num:
MEP:
83.54%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.57
Avg Expression:
3.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.69711738656058 | 2.08262419257268e-08 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.37699942471488 | 1.11589814046586e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.78089642424427 | 1.81010264608105e-09 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.84117212241255 | 1.51639971103378e-21 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.57317881183917 | 4.69306600668124e-06 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.67379308392627 | 3.57261129309908e-07 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.37696824569265 | 2.43638215481574e-06 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.30086514539316 | 1.36055204812554e-19 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.52679376334951 | 2.19735007471051e-07 |
10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.14708818432629 | 7.35752338920423e-05 |
11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.97633089653194 | 0.0107073210708805 |
12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.22979904005563 | 8.59086723937482e-13 |
13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.41501216458812 | 1.56856569781775e-05 |
14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.74438185434384 | 5.2473973866375e-12 |