OSA-LNCN4666


Function Link


Basic Info

Chr:

Chr4

Start:

23068860

End:

23075752

Strand:

-

Ref_name:

OSA-LNCN4666

Sequence
(OSA-LNCN4666.1):

ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUACUGCACACUAACUUUUUGAUAUGUUAAGAGUUUUGAAUUUUGUUGAUAUCGAUACGUUACACUGACUAGUUCGUUGAAAUUAUCUAAAAAAAAUGUAAGGUAAAAUUAUCAUGACAUUACAACAAUUCUGAAUUUUUUAGGUCUAGUUCUAUUUCUAAAAUGACUUUUUUUGAUAUUCAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGAACUGAGUUAGUAAUUUGUGUCAGUUACAGGAAUGUACUAUUGAAAUUACAAAAUUUUUUUGGUGUAAUUCUUUAACUAAAAAAACUGUAAUAUAUUUGCAAACAUGUAAAACAGUUCAUAGUUUGCUAUAAUGAAUGUUUUUUUGCUGUUUUGUAAGUAUGUUACUCUUUUAAUAUUUUUGUUUGUAACUUUGAAUAAUUGACUUUGCUGUCCUUGGCUACUUUUGUGUGUUCUUCUUGAUCUUGUCCAGUUUGUUUGUUUGUAUGUAAAUUAGAGGACUUGUUUCUUGAAAAUGAAAAUGAAAAUGGUGGCUAAUAUCUUCACUAGGAGAAAUAUGAUGUGCAUUUUUUAUUCUUUUUUAUGUCACCAAGUUAAAUGCAUGGUUUGAAAUUAGUAUGCAUGUGUACUUUAUCAUUUUGCACUAUAAAUACUAUAUCUAUUACUAUUACUAUAGUGCAUUAAUUCAUCAAUUACAGUAAUUUAUUACUGAAAUUACACUCUUUCUUUUGUUGUAAUUCCUUAACUAAAUAACUGUAAUAUGUUUUGAAACAUGUAAAAUAAUACAUAGUUAACUGUAAUGGAUGCAUUUUUUUAAUUUGGAAUGAAGGUGUUGAACCAGAGAAUGAAAUUAAUGAUGAUGUUAAUGAAGCUGUUCAAGAUAAUGAUAAUUUUACAUCAUCUCCAAUGGUAUAAUUUUUUAACUCACUUUUUUAUUAAUUACAUCAUCUCCAAUGGUAUAAUUACAAUGUAAUUUUGUACAAUGUGUGUAUUUGAAUAGUUUUAUGCUUCAGUUGUAUAAUAGCUGAAAACCUUGAAAUUGUUAGGGUGUACAGUGUGUGCAUUUGAACAGUUUUAUGUAAUCUGCAAAUGGUUAAAUAGGGUUUUCUAAUUGAAAGAUUGAUUAUGGUGACAAUUUGCAUUGCUACCUAAUUUGUGUUGAUGACAAGAAUGUGCAAUUCUUGCUAGACCAGGUAGAAAUAUAAUUGAUGUUCUGAAUUUUUAUGAUUGAUGACAGUUACUAAUUCUAUUGAAGCAUUCAGGGUGUUUUUGAGGCUAUAAUUUUGCAAAUGCUAUAUGCUAUGUGCAAUUUAGUUAGGUAUUUUUAAUCUUUCAGUGACAAUCUUGCAUGAGUAAAGAACAAAAGUUAUUGACGAUUUCAAAAUGAGUCAUAGAGGCUGAUUUCCUGAUGCUCGUAGAUAUUUUUCAUAUUAGUUUCAAAUUGAUUUUAGAUUGUUACAUGACUAAGACAGGCUGACUUUUACUAAGUUUCAGAUUGUUCUCUGUAUUUCAAUUUACAGUACAAACAUAUUGCAGUUACAGUUUAAUAGUACUGUAAUUCUAUUAGAAAUUUACUGUAAUUUUUGAAUUUGUCCUGUUAAUUCAAAGAAUUAAGCAUUUUACUUUUUCUGGCUUUGAUUUGCAACUUUUCUUCUUUUCCUACCUUCUUGUUGAUUCUUGCAUUCUAACUUUUCUUAAGGUUUGGAUCUCUUCUGUUUUCGAUUUGAAGGCUUGUUUGAAUCUGGAUUUUGAUUCUUACUAUCUCCAUAUCCAAUAUCUUUUAUCUAGUGGAGUAAGCUUCGCUUUUCCUUCUCCUCACUUUCUUCCAUGGCGCGAGAUUGAUCUGGGAUUGGAGAUGUACUCUAUUCCAGAAAGAAGUGGUACAUCGUGAGCUGGAAAAACGUGAGCUGUAAUCACGUGCAGUAAAGUUUUCCAAUUUUGGCUUUUUGGGCUAAAUGGGCUUUUAAUUGGGCUGACCCUUUUAAUUGGGCUAUUGAAGAUUUUUUUGUGCAAAUUUGUUUUUUAGUUUUCUAUUGUUUGAUAUUAAAUUGGGCUUUUUUUUAUCUGGGUUUAUAAUUGGGCUCAAUGGGCCUUUGAUUGGGCUGAGCCGAUACGAUGGUGUCAAAAAAAAGUCAAAAAAUCUGAAGUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU

Sequence
(OSA-LNCN4666.2):

ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUGUUGAACCAGAGAAUGAAAUUAAUGAUGAUGUUAAUGAAGCUGUUCAAGAUAAUGAUAAUUUUACAUCAUCUCCAAUGUGGAGUAAGCUUCGCUUUUCCUUCUCCUCACUUUCUUCCAUGGCGCGAGAUUGAUCUGGGAUUGGAGAUGUACUCUAUUCCAGAAAGAAGUGGUACAUCGUGAGCUGGAAAAACGUGAGCUGUAAUCACGUGCAGUAAAGUUUUCCAAUUUUGGCUUUUUGGGCUAAAUGGGCUUUUAAUUGGGCUGACCCUUUUAAUUGGGCUAUUGAAGAUUUUUUUGUGC

Sequence
(OSA-LNCN4666.3):

ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGAACUGAGUUAGUAAUUUGUGUCAGUUACAGGAAUGUACUAUUGAAAUUACAAAAUUUUUUUGGUGUAAUUCUUUAACUAAAAAAACUGUAAUAUAUUUGCAAACAUGUAAAACAGUUCAUAGUUUGCUAUAAUGAAUGUUUUUUUGCUGUUUUGUAAGUAUGUUACUCUUUUAAUAUUUUUGUUUGUAACUUUGAAUAAUUGACUUUGCUGUCCUUGGCUACUUUUGUGUGUUCUUCUUGAUCUUGUCCAGUUUGUUUGUUUGUAUGUAAAUUAGAGGACUUGUUUCUUGAAAAUGAAAAUGAAAAUGGUGGCUAAUAUCUUCACUAGG

Sequence
(OSA-LNCN4666.4):

ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGGUGAUCUCCUUCUCCUCUUCUCCAGUGAAUUUAGUUCCCGUUUGUUUACUGCUUUGUUCAUCGACGCGUCGACUAUUUGUAUUUUGUAGUGGUGGGUUUUUGACGCUGAUUUGUGGGAGUCAUCGACGAUUCGUUGGCAAUAUCGUUCUUCCUUUCUCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAGGAAUUUACUAUUGAAAUUUCACCUUUUUUGUGUAAUUUUUUAACUAAAUAACUGUAAUAUCUUACCUGAUCAGUUUCUGUUUUUGAAUUGAAACUGUGUAACUUAAAUUUGUUCUAUCAAUCUGUGAAACAUGUAUGAUGGAUUGAGAUCACUUCACAUGGUAGAUUUCAGAUGAUUGAUUUGUUUUCUAUACAGAAUUUUACACAGUCAGAUUAAUAAAUGCAGAAGUAAACAUGAUCUUUUAUCUCCUUUUACUUUAUACUGAUGUCUUUAACAUUGUCUAUUUGGAAAUUGUCCACAAUAACUAGAGUUCAGGUAUAUAUUAGGGCCUAUUGAUGUAUUUAGGUUUAAGUUUAUUUCUGAAGUGACUUUUUCUGAUAUUUAGAUUUUGUUUUUAUCUGCCUUAUUUGAGACAAUGAACUCUAGAUGUAGUACUGUGUUAAAUGAUGA

Sequence
(OSA-LNCN4666.5):

ACCUCCAAAGAGGAGUCGAAAUAAACCGAUUAAUGCCCCGCCCCCAUCGGGAUGGCUAUAUGGCUGUCGACUGAUUUUCUAUAGCUGGAUCAUUCGUUUUGUUGGCCGUUUGAUUUAUUUGAGAUUCGUGCAAGCUGGUAGGGCCUUUGCUAGUUGGGUCUGUGGGCUUUUUAUUCUGUGUGGGCUUUUGGUUCUGAAUUUGCUUUGGGCUUGGACAAUUGCUUCGGGUGUAUAGCUUGGACUUUUGGUCUACCAUGGGACCCACUUGCACUGUUGACAGAGAGAGACUGAGUGACUGUGUCUGUGAGAGAGAGAGAGUGAGAGCAUACAGGGCGAGAAAAUUUCUUGCUCUCAUCGUCCCACGCGAUGCGGCGAUUGUGGAAGGCGACACAACAUCGAUUCGCCGUGACUGAAUCUCUUGAAGCAUCCAUGGCCUUCUUAUGCUAAAAGUCUGCAGAUGCUAUAUAUGCUAUGUGGAAUCUAGUUUGGGAAGUUGAUUUGAAUUGGUGUCCUAAGAGGGAAGCCAUGAAUGCGAAAAAGAUAAGUUUGCAUUUAUCUGCCUGAUGUGAGGCCACUUUUUUUUAUAGAGAAUACUUCCUGAUCUGUAUGUUUGAAACUUUAUCAAUUUACUUCCAUGUUACUUCUGAAAUUUAACUCUAGAUAUAGUAUUGUGUUAAAUAAUGAACUGAGUUAGUAGUUUGUGUUAGUUACAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

66

LEP:

13.41%

ME_num:

411

MEP:

83.54%

HE_num:

14

HEP:

2.85%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.57

Avg Expression:

3.08

Tip: OSA-LNCN4666 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.697117386560582.08262419257268e-08
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.376999424714881.11589814046586e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.780896424244271.81010264608105e-09
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.841172122412551.51639971103378e-21
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.573178811839174.69306600668124e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.673793083926273.57261129309908e-07
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.376968245692652.43638215481574e-06
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.300865145393161.36055204812554e-19
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.526793763349512.19735007471051e-07
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73421.147088184326297.35752338920423e-05
11Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.976330896531940.0107073210708805
12Nipponbare // panicle // AM--/--Nipponbare // panicle // PM4.229799040055638.59086723937482e-13
13Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.415012164588121.56856569781775e-05
14Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.744381854343845.2473973866375e-12