Chr:
Chr4
Start:
22483548
End:
22484334
Strand:
-
Ref_name:
OSA-LNCN4653
Sequence
(OSA-LNCN4653.1):
UGGCGGGCGGGCGAUGGCAGAGCGCCGGGGAGAAUGCCGGCGGGCGGGCGCGGAGGCGGCGGCGGGCUGCGGGCGGGGGAGGAGCGGACGCCGACGAGCGGCCGGCGGCGGGGAUGGCUGCGGGCGUUGCGGGGGCGGAAGCCGAAGGCGGGCAGGCGAGGACCGAGGAGCCGACGCCGACGCCGGCAAGCGGGCGCGGAGGCGGCGGCGGGUUGCGGGCGGGCAAGGAGCGGACGCCGAUGGGCGGCCGGCGGUGGGGAUGGCUACGGGCGUUGCGGGGGCGGUGGCCGGAGGCGGGCGGGCGCGGAGGCCGAGGCCUCGACGCCGGCCGUCCCGCCGCCCUCGUCCUCCCCGCGCGCACGCCGUCGAGAGGCGCGCCGCCGUGCAUUCCAUCCUUGUCGUCGUCCUCCUCAUCCCCCCACGAGUUGGCCAGUGGUGGAGGUGGGGGCACCGUCGGAGCGGCGCGGCGGAGGGGGCCUCGACGCCGGCCGUCCCGCCGCCCUCGUCCUCCCCGCGCGCACGCCGCCGAGAGGCGCCGCCGCCGUGUGCUCCAUCCUCGUCGUCGUCCUCCUCAUCCCCCCUCGUCGGCGCCGCCCGCCGCCGCCGCGUCCUCCCCGGCGCUCCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.34%
ME_num:
MEP:
25.41%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.96
Avg Expression:
6.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.31099824927887 | 0.0130430411914525 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.20761294867927 | 0.00798634971456296 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.37949718083288 | 0.0317534345216127 |