Chr:
Chr4
Start:
22310581
End:
22311842
Strand:
-
Ref_name:
OSA-LNCN4646
Sequence
(OSA-LNCN4646.1):
CUUCCGCCAGCGUCCGCCGAUCCUCUUCUAGCUUCUAUCGCUAUAUUCAGAUCUUUGGUGGUUUCGUUUCUUUUGUUCUCAAUCCAUCUUCCUCUUUUCUUUUACUUUUUGAUGCGAUGCCUGGAGUUGUGCAUUAGGCGAUGAUGAUUUGCUCUUUAUACCAUCAAACUCUGAAUCAAUCAUACCUUGUGUUGAUUGCACAAAUAUUUCGCAAUAAAUUAGAGUCUCUGAUGCGCUCAUUUCAAUAGCGUUGUCAGCGCUGUACGUUGCCGAAACGAAUCGGGCAAAGAUUCUGGCACUCGCCAUCUCAUAUAUGGCUUGUUGCAUUCAACUUGUCCAUACAGUUCCCUCUUAUCAAUUUUUUCUCGGUUGUUUUUUUAGAAGGUUAUUUUCUCUCGGUUGUUCUAAUGGAUGUUCAGUCGAGAUAUGUUUUCUGAGUUAGUAUUUUAACUUUCGGAUUUUAAGUCGAAAGCGUUGAUUGGUAAUACGGUCUUCUAUUAACUGAAUCACUUUUUAACGAAAGGCAGAUCAAUCUGAGGAAGUUCUUCUCCUUCAAUUUUUAUCAACGACUCGCGCUGUUGGCAGAUCAAGUUCUUCUCCUUCAGGAUAACUUUUAUCAACGACUCCUCGCGCUGUUGGAAGAUCAAUCUGAGGAAGUUCUUCUCCUUCAGGAUAACUUUAUCAACGACUCCUCGCUGUUGGCAGAUAAUGAAACUCAACGUCAACGAUACCUCACUGUUUUGUUUUAUGGGUGGGGCUAUACUGCCUAUAUUGGGCCGGCCAUCUUCUCGGCUUAUUUACCCGUUUGAAGAGCUGUUGAUUGAAGCUGUGAGCCUGUGACUGGACGCGACCAUUGUGAACGGCAAUUAGCGACAUUAACCUAACAUAACUAUCCGAGGAUUAUAACGAUGCAAAUCUUAACAACAAUCUCCGAGAGGAAUUGGGCAAAGAUUCUGGCACUCGCCAUCUCAUAUGUGGCUUUUGCAUUCAACUUGUCCAUACAGUUAUUUUCUUUAGUCGAGAGUAAGACCUGAUUUCCUUCGGCGAUUAGUUUCCUAUGGAAUUGUAUUGGAUUGGAGCUGGUACAAUAGUAGGCUACAAACCUUCUAUAAACUUCUAUAAACAACGUAAUGUGUAUAUGACAGGUGGAACUAAGUAUUAAUAGAAUAA
Sequence
(OSA-LNCN4646.2):
CUUCCGCCAGCGUCCGCCGAUCCUCUUCUAGCUUCUAUCGCUAUAUUCAGAUCUUUGGUGGUUUCGUUUCUUUUGUUCUCAAUCCAUCUUCCUCUUUUCUUUUACUUUUUGAUGCGAUGCCUGGAGUUGUGCAUUAGGCGAUGAUGAUUUGCUCUUUAUACCAUCAAACUCUGAAUCAAUCAUACCUUGUGUUGAUUGCACAAAUAUUUCAGUCUCUGAUGCGCUCAUUUCAAUAGCGUUGUCAGCGCUGUACGUUGCCGAAACGAAUCGGGCAAAGAUUCUGGCACUCGCCAUCUCAUAUAUGGCUUGUUGCAUUCAACUUGUCCAUACAGUUCCCUCUUAUCAAUUUUUUCUCGGUUGUUUUUUUAGAAGGUUAUUUUCUCUCGGUUGUUCUAAUGGAUGUUCAGUCGAGAUAUGUUUUCUGAGUUAGUAUUUUAACUUUCGGAUUUUAAGUCGAAAGCGUUGAUUGGUAAUACGGUCUUCUAUUAACUGAAUCACUUUUUAACGAAAGGCAGAUCAAUCUGAGGAAGUUCUUCUCCUUCAAUUUUUAUCAACGACUCGCGCUGUUGGCAGAUCAAGUUCUUCUCCUUCAGGAUAACUUUUAUCAACGACUCCUCGCGCUGUUGGAAGAUCAAUCUGAGGAAGUUCUUCUCCUUCAGGAUAACUUUAUCAACGACUCCUCGCUGUUGGCAGAUAAUGAAACUCAACGUCAACGAUACCUCACUGUUUUGUUUUAUGGGUGGGGCUAUACUGCCUAUAUUGGGCCGGCCAUCUUCUCGGCUUAUUUACCCGUUUGAAGAGCUGUUGAUUGAAGCUGUGAGCCUGUGACUGGACGCGACCAUUGUGAACGGCAAUUAGCGACAUUAACCUAACAUAACUAUCCGAGGAUUAUAACGAUGCAAAUCUUAACAACAAUCUCCGAGAGGAAUUGGGCAAAGAUUCUGGCACUCGCCAUCUCAUAUGUGGCUUUUGCAUUCAACUUGUCCAUACAGUUAUUUUCUUUAGUCGAGAGUAAGACCUGAUUUCCUUCGGCGAUUAGUUUCCUAUGGAAUUGUAUUGGAUUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.2%
ME_num:
MEP:
66.06%
HE_num:
HEP:
21.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
23.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.46498103279711 | 2.77568320647361e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.49850829072262 | 3.55681513495701e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.64987936781921 | 1.42932217469826e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.87430438723102 | 1.89237991742005e-17 |
| 5 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 8_days_after_shift | 1.30557466525036 | 0.0335595860483422 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.54368550965301 | 4.67822920859891e-05 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | -1.93109868922192 | 0.00855654377088664 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.06647569761556 | 1.08128550329875e-15 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.02984771041177 | 0.0401284666037447 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.34582099996867 | 0.00392617754903644 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.79588324629364 | 3.85552255022753e-22 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.41998871941696 | 2.69008974800746e-05 |
| 13 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.35997608464485 | 0.000765527521692983 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.66363681236269 | 5.72266562577498e-06 |