Chr:
Chr4
Start:
22305403
End:
22305764
Strand:
-
Ref_name:
OSA-LNCN4645
Sequence
(OSA-LNCN4645.1):
GGACAAACGCCACAGGUCAAGAUGGAACAGCUGGAAUAUUCGCCGCUGCAGCUUCUUCCAUGAAGCCGAUGAAGCAGCGCGAGCGAAUGGGAAAGCGAGGGGGAGAAGAAAGAGAAGACAAGAAAAAAGCGAGGGGGCAAGAGGGGGAAGCGAAUUUCGAGAGAACAAUUCAAAGAUGCAACGCGAGGGGUAUGGUGCUAUGUUGGAAGAAGAAGCUUCGUGCCACCUGCGCCGCCGCCGCCGCCUGCGGCGGCGGAGGAGGAUGUGUGGGGGUGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.1%
ME_num:
MEP:
35.57%
HE_num:
HEP:
8.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.85
Avg Expression:
5.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.48178858224242 | 0.0244915462374606 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.29959465509454 | 2.46758022760921e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.21010002772635 | 0.000166115385951392 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.85417953023615 | 0.00310470493960583 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.94158583056052 | 0.0013590447832312 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.63185656734154 | 3.46566210310869e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.89869491429673 | 9.37705466261999e-20 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.34470203759749 | 4.36944468430649e-11 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.61859759360254 | 0.000274584835786036 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.55781063996405 | 0.0107843358314725 |