RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4638

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

21798167

End:

21799091

Strand:

+

Ref_name:

OSA-LNCN4638

Sequence
(OSA-LNCN4638.1):

GUGAAUUUGGCUUCCAAUCAAAUUCUUCAGAAGCUGAAGCUUCCAUGGAGAGAGAAGUGACAGGCUUUCAGCAACGAGAUGAGCAAAUUUUGACAGCUUCCAAGCAAUAGCCAAUCUCACACGAAUCCACAACCAAUUCAACUCACACCCUGUUAGAGAAAGGCAAUAGGUUGUCAUUUUGUUCUGACCUUGAAGCAUUUAAGCAAAUUGCUUUGUUGAAGGAUGCCACACUGUCAGCCAUGACUAAGAUGUAUUGCAUGAAUAUAGUUUUCGGUGUUAUCAUUGUCGGGCAAGGAAUGGGGUUCUUUCAGCAUUAUAUAAUGUGCCUGAUGAAUCAGUUAAAAAAGUUUGGGUGCUACCUAGUAAAAGAAGCUUAUCCAUUUGUAUUUGUACUUUUACCUUAUUAGUAGCAAUAGCAAUAUGAUUAUAUUUGUACCGCUAUUAAGUACAAGACAUACUUGUGAAAUGUUCAGCAUGACAUCUUGGCCAACUCUCACCGAAACAUGUCUGUUAAUAUGCAUUCUGGAGCCAAAGUUUAGGGAGAGUUUGUUCUAAACUAAGUCAGACAUGAGUUCCUUAACAAAGCUGAAUACAAUAGAAGUCAGUCAUCGACACAAAACAUCCAAAUAUGACAUAGUAAUUGCAGCUGUUCUAAUUUCUAAAAUGAAAUCAGACCUGACUGAAUUAACCUUAAGUACAGGGUCUGAACAAUCAAAUUGAUGCUCAAUAGAAGUAUGCAACACAUCAAGGGGAAAGGAAUCUCUCACCUCGUAUGGCACAGAAAUGUACACUACAAUAGCAGAUGCAAAUUGUUCUAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

420

LEP:

85.37%

ME_num:

71

MEP:

14.43%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.91

Avg Expression:

1.61

Tip: OSA-LNCN4638 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.865644282967080.0204330356800063
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.983206671605570.00251024229976913
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.690480392342270.0230885968267339
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.726729300664320.0133197580336456
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.761620091021510.00913266193429527