Chr:
Chr4
Start:
21330918
End:
21332249
Strand:
+
Ref_name:
OSA-LNCN4629
Sequence
(OSA-LNCN4629.1):
GAAAUAUGUUGCUCUCAUUUUGGUAGAGGUGUUGAUCGUUUUCAUCUGACCACAGGGCUUCUGCUUUAGGGUGAAGCUUGUAAUUUUCUGUGCAUUGUUCAUAAUGUUCUUGCUUUAGGCUGCAGCUUUUGCUUGUACAGUGCUUUCUAAGCUUGUGUAUAAAUAAGAUAGGAUUAGAAUGAUAAAUGUAUUCAAGAUGUGUUGAUGUGGUUUGGUUUAAGUUAAUCUGUUCAUAGUCUUUCCUGAUUUAAUGGAGGCUGAUUCUAUACUGUUGAUUCUCUUUGCGAUGUAUGUAGGGGCCCGCCUCGCUUUGAAGGGGACAGGCCAAGGUUUGGUGACAGAGAUGGGUACCGUGGUGGUCCUCGUGGUGCUCCUGGUGACUUUGGUGGUGAGAAGGGUGGAGCUCCUGCUGAGUUCCAGCCAUCCUUUAGAGCUCUGGUGGCAGACCUGGCUUUGGCCGUGGUGGUGGCGGAGGCUUUGGCGCUGGCCCGACCUCUUCCUCGAUGGAGUGAACUUCCCGUAGUUUGGAUAUGAUGUUUUCCUUCGCAUGAGGCGUUUAAUUUUGAAGGACAGUUAAAUUAUGUAGCAGUGAUGUUUGCAGGAUCGACCGCUGUUGACAUAUGCUAAAAAUAUGCUAUCUUGAUACCUUCCAGUAUAAUAGUUUUUGCGAACGCUUAAGUUCAAUGUUAAUGCUUUUGACAUAUUGGCGGAAAUUAUCUUUUGCUUCUGAAAAAAAGAAUUAUGUGCAUGUUUGAUUGCUGGCUGCGUGAAAUAGUGAUAUGAUAUCUGUAUGCAAGUUUUUGAUGGAAGUACGUGUUUUUGAUGUGCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.25%
ME_num:
MEP:
40.65%
HE_num:
HEP:
55.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.86
Avg Expression:
67.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.05216975291293 | 0.0128739284942465 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.07158449209955 | 0.015931272192876 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.07985302076435 | 0.00272195215147627 |