Chr:
Chr4
Start:
20940961
End:
20949079
Strand:
-
Ref_name:
OSA-LNCN4628
Sequence
(OSA-LNCN4628.1):
GUUACUUGAAUAAUAUAGUGUUGUUUCUUGAUACAUUUUUUUUUGAACGACUCGCACGAGACGGUACGAAGUUCUAUUGAUAGAGCAGGAAAAAAUUACAAGAUCACAACCCUAAAGGGUCGUAACCAGGAAAAAGGAAAAAUAUACCACCACCCACACACCGACAGCUCCAACACACAAGACCGGGAGAAGGCUAACACCGGACCGGCCGCCGCUAAGCUUGACCGACUGCCGCUAGACCAACAAAGAAACAUAGAUGAGAUCGCCCAAAAGAACACCCUCACAACCAAUACAAAGCCAACUCCUAGAGUGUGCUUGCACCAAUCGAUCGAGAGGCUUCGGCUAGGGGAUACCAAAACGACGUAUUCAAGAAGAGAAGCGAUGGUAAACCACCGCCGCCAUCCGUCGGGGCUCAAAGGAGCCAGGACUGGGCUUUCGCCCGGCAACCACCCUUGAGGGAUGAGACAGCACGACAACACCCUCAAGAGGGGGAAUUCCAUCGUUGUCGGUCCGGCCAUGGCCAGGCUGGGUUUUCACCCGCUGCUCACCACCGGCGAAUCCAUCAGCAGCUCCUCGAACCGAGGUCGCCUCCACUGCCGGCCGCGCCUCUCGCGUCAAGCCGGCCUCCUCCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
45.12%
HE_num:
HEP:
52.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.83
Avg Expression:
35.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.17353802229234 | 4.04284381660192e-05 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.14483749433038 | 0.0264840244180543 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.28090961122747 | 1.47346716201385e-15 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.16064430296163 | 0.0162400775940381 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.05802630917889 | 1.70615782359402e-09 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.17175700857667 | 2.99791172232151e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.28823637380848 | 4.88713471690355e-13 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.62153764835425 | 3.58138805984852e-06 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.30449129732822 | 0.00312294115318972 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.72245793721305 | 0.000116379322079225 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.39385328771496 | 2.27476078566077e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.87461076798715 | 5.59036342549631e-09 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.39375944748853 | 2.21885107318521e-06 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.39367629630813 | 2.31041848965803e-06 |