Chr:
Chr4
Start:
20708644
End:
20710880
Strand:
+
Ref_name:
OSA-LNCN4607
Sequence
(OSA-LNCN4607.1):
UACAAGCCGCAGCCGAAGCCGACUCCCACCCCCUACACUCCCACUCCGACGCCGCCAUCCUACAAGCCGCAGCCCAAGCCGAACCCGCCACCCACGUACAAGCCGCAGCCCAAGCCAAACCCGCCACCCACGUACAAGCCGGCGCCGCCAACCUACAAGCCGCAGCCUAAGCCGAACCCGCCACCCACGUACAAGCCGCAGCCUAAGCCGACUCCCACUCCCUACACUCCACCCACGUACAAGCCACAACCGAAGCCGACUCCCACUCCCACUCCCUACACUCCCACGCCCAAGCCGAACCCGCCGCCAACCUACAAGCCACAGCCCAAGCCGACUCCCACGCCGACGCCGUACAAGCCGCAGCCCAAGCCGACUCCUUCUCCCUACACCCCCAAGCCAACUCCGACGCCGCCGACCUACACACCGACGCCAACGCCGCCGUACCACAAGCCGCCGCCGUCCUACACCCCCGGCCCGCCGCCGCCCUACUAGUUGUGUUCCGCCACUCUCCGUCACGUUCCGACCAAAGGAGGUGACCGACCGACCAGAGUUGUGCGAGAGGCCAAAGAGGCUCUUCCUUCCGUGAAGAUUGCUGUGCAUGCCGAGCUGCGCUGCCUUUAAUUACCUAUAGCUAAUUAAUUAGCUAGGGCCAAUGUUGCGAGGAGAAUAAUGCAUGCUUGAGUGCCAAUGUUGCUAGCUCGCUCCCUCUCUAGAUGUGAUGUGUAUCAUGUGUUGUGUGUUGCUCGAAUUUGUACUGUCUAGCGUACGUCGAUCCCGUGGUGAUUUGUGGAGUAUGGUAUUGUUGUGUUACGGUAUAACCAAAAAUAACAGCGGAAAUGGAAGUAAAAGCUGUUUUCGAUCGUCCCAGCAUUUCUUCUUUCCUCUAUUCCUGUUCUUUCGCACCGUGCAACCACGAGAAAUUGAUGAUUGCAUGCAUGUCAGAGAAGACUCUAAACUUUACUAGUACAAAUUGUACUGAUAAUUAAACUCCACACAGUGACAUAUAGAGAUUUCACUUGAAAUAAAUAGUACUUCCUCCGUUUUCGUAUAACACCCGUUUCAAAGAUAUUUGAUACUGUUUGAUCAUUCGUCUUAUUCAAAAAAUUUAAGUAAUUAUUUAUUCUUUUCAUAUCAUUUGAUUUAUUGUUAAAUAUAUUUUUAUAUACACAUAGUUUUAUAUAUUUUAUAAAUAUUUUUAAUAAGACGAACGGUCGUGCUGCUACUGCGUCAAAUAUUUUAAAACGGAGGGAGUACUCCCCCAGAACGAGCCACAAGGGUACGACUAUCACAAUUGGUGACGCCAUUAUAAAAAUGCAAUAGUCUCUGCAUUUGCAGGUGCAGCAGCAUGCAUGCAUGCCUGAGCAGCCGUGAGCUGUCACGCGUUGCUACAGUCUCACUCGCCGCACAGCACACAGGUACAGCGACCGCCUCUGCAUUUGCAGGAGGACGCCCAUACGGCUGUGACAUCAAAGCUAGCCUGCGCUCCAAAACUUCAGGACCAGAAACAAUGUCUGUUUGCAUCUCCAUUUUCGACGCAGGCGCACACGUCGGUCCGAUAGACUUUGGAGUGCAACAAGAACUCGAAAGACAUAAGCAGAGUGUAAUCAAGCAUAUGGUUUAGUGCUGAGUUUUUCAUUUCAUAUAGCAAGGGCAUGUUUAUUUCGCGAAAUAAAAUUUUUUUUUGUCACAUCGAAUAUUUGACUGUAUAUCGGAAGAGGUUUUCAAACACGAAUGAAAAAACUAAUUUUAUAACUCGCCUGAAAACCACGAGACGAAUCUUUUGAGCCUAAUUAAGACGUCAUUAGCACAUGUAGAUUACUGUAGCACUUAUGGCUAAUCAUGGACUAAUUAGACUCAAAAGAAUCGUCGCGCGAUUUCCUCCCUAACUGUGUAAUUAGUUUUUCUUUUAAUCUAUAUUU
Sequence
(OSA-LNCN4607.2):
GAAGCCGACUCCCACCCCGUACACUCCCACUCCGACGCCGCCAUCCUACAAGCCGCAGCCCAAGCCGAACCCGCCACCCACGUACAAGCCGCAGCCCAAGCCAAACCCGCCACCCACGUACAAGCCGGCGCCUAAGCCGACUCCCACUCCCUACACUCCACCCACGUACAAGCCACAACCGAAGCCGACUCCCACUCCCACUCCCUACACUCCCACGCCCAAGCCGAACCCGCCGCCAACCUACAAGCCACAGCCCAAGCCGACUCCCACGCCGACGCCGUACAAGCCGCAGCCCAAGCCGACUCCUUCUCCCUACACCCCCAAGCCAACUCCGACGCCGCCGACCUACACACCGACGCCAACGCCGCCGUACCACAAGCCGCCGCCGUCCUACACCCCCGGCCCGCCGCCGCCCUACUAGUUGUGUUCCGCCACUCUCCGUCACGUUCCGACCAAAGGAGGUGACCGACCGACCAGAGUUGUGCGAGAGGCCAAAGAGGCUCUUCCUUCCGUGAAGAUUGCUGUGCAUGCCGAGCUGCGCUGCCUUUAAUUACCUAUAGCUAAUUAAUUAGCUAGGGCCAAUGUUGCGAGGAGAAUAAUGCAUGCUUGAGUGCCAAUGUUGCUAGCUCGCUCCCUCUCUAGAUGUGAUGUGUAUCAUGUGUUGUGUGUUGCUCGAAUUUGUACUGUCUAGCGUACGUCGAUCCCGUGGUGAUUUGUGGAGUAUGGUAUUGUUGUGUUACGGUAUAACCAAAAAUAACAGCGGAAAUGGAAGUAAAAGCUGUUUUCGAUCGUCCCAGCAUUUCUUCUUUCCUCUAUUCCUGUUCUUUCGCACCGUGCAACCACGAGAAAUUGAUGAUUGCAUGCAUGUCAGAGAAGACUCUAAACUUUACUAGUACAAAUUGUACUGAUAAUUAAACUCCACACAGUGACAUAUAGAGAUUUCACUUGAAAUAAAUAGUACUUCCUCCGUUUUCGUAUAACACCCGUUUCAAAGAUAUUUGAUACUGUUUGAUCAUUCGUCUUAUUCAAAAAAUUUAAGUAAUUAUUUAUUCUUUUCAUAUCAUUUGAUUUAUUGUUAAAUAUAUUUUUAUAUACACAUAGUUUUAUAUAUUUUAUAAAUAUUUUUAAUAAGACGAACGGUCGUGCUGCUACUGCGUCAAAUAUUUUAAAACGGAGGGAGUACUCCCCCAGAACGAGCCACAAGGGUACGACUAUCACAAUUGGUGACGCCAUUAUAAAAAUGCAAUAGUCUCUGCAUUUGCAGGUGCAGCAGCAUGCAUGCAUGCCUGAGCAGCCGUGAGCUGUCACGCGUUGCUACAGUCUCACUCGCCGCACAGCACACAGGUACAGCGACCGCCUCUGCAUUUGCAGGAGGACGCCCAUACGGCUGUGACAUCAAAGCUAGCCUGCGCUCCAAAACUUCAGGACCAGAAACAAUGUCUGUUUGCAUCUCCAUUUUCGACGCAGGCGCACACGUCGGUCCGAUAGACUUUGGAGUGCAACAAGAACUCGAAAGACAUAAGCAGAGUGUAAUCAAGCAUAUGGUUUAGUGCUGAGUUUUUCAUUUCAUAUAGCAAGGGCAUGUUUAUUUCGCGAAAUAAAAUUUUUUUUUGUCACAUCGAAUAUUUGACUGUAUAUCGGAAGAGGUUUUCAAACACGAAUGAAAAAACUAAUUUUAUAACUCGCCUGAAAACCACGAGACGAAUCUUUUGAGCCUAAUUAAGACGUCAUUAGCACAUGUAGAUUACUGUAGCACUUAUGGCUAAUCAUGGACUAAUUAGACUCAAAAGAAUCGUCGCGCGAUUUCCUCCCUAACUGUGUAAUUAGUUUUUCUUUUAAUCUAUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.11%
ME_num:
MEP:
36.59%
HE_num:
HEP:
19.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.85
Avg Expression:
34.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.50976470410711 | 1.17980586506827e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.74453895458115 | 0.00175328408372801 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.89541427002194 | 4.69987065088502e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.63317154015066 | 1.92020618950791e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.91506362155317 | 3.91282714381928e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.4882802758028 | 6.05555892719954e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.86204740500857 | 3.46178067519962e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.0278202253264 | 1.15861599024101e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.22173462511092 | 0.00010864514796746 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.80816166703408 | 5.05659943055385e-08 |