Chr:
Chr4
Start:
20408009
End:
20408737
Strand:
+
Ref_name:
OSA-LNCN4594
Sequence
(OSA-LNCN4594.1):
CAAGGAUGUAGAAAUUAUUUAGUGCAAUGGCUUGUUGUUUGUUCCCAAAAAGAUCAAGGGGUCUGGGAUUGCUGAAUUUUGCAAACAACGAACAUAGCUUUGUUGUGCAAAUGGUUAUGGAAAUUAGAAAAUGAAAAUGGUGGUGGCAAGAUCUUAUUAAAGCCAAGUAGCUAAAAAACAAAACCCUCUCAGGAGUAUCAGUUAAACCUGGAGACUCUUAUUUUUUGCAGGGCUUGAUGGAAAUAAAAAAUGUCUUCUUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.07%
ME_num:
MEP:
67.68%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.64
Avg Expression:
2.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.9480388882048 | 9.14539350398291e-06 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.65978368637057 | 0.00727457538615039 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.96905458993113 | 0.00752352253514055 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.59534984801285 | 0.0212657057329443 |