Chr:
Chr4
Start:
20371472
End:
20390297
Strand:
+
Ref_name:
OSA-LNCN4593
Sequence
(OSA-LNCN4593.1):
UAAAUAUAUACGAUGUAGGUUAUGGUUGUCAAUUUAAUUAUAGUGCAUAAAAUGGUUCAGAUGGAUUUAGAUAUUAUUAUCAAAAGAUAUGUCUUUUGUAAUAAUUCCUAUAUCAAUGGGUAGAUAACUGGGAAAACAAGGAGCAACCAAUCUGAUAAGUACUCUAGAACUUAUUGCUUAUUUACUAAAAUGUUUAAUGUGUAGUAUAUAAUAUACUUUAUGAAUAAAAAAAUAUCCUAAUAUAUAAUCAUAUGCCACCACUUAUCCAUAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.76%
ME_num:
MEP:
48.17%
HE_num:
HEP:
41.87%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.66
Avg Expression:
9.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.45328631136988 | 0.0253186972933286 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.63608922083287 | 0.00188784278869834 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.10239864209539 | 0.000288236131209785 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.82474565290093 | 0.0205088084334406 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.55718080472066 | 0.00218465113738508 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.86957569589307 | 0.00364306211570095 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.74181210788542 | 0.0359087105762487 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.4876566011258 | 0.00317472212816449 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.71078653796154 | 0.00147044919063835 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.60155874480098 | 0.0204303515438688 |