Chr:
Chr4
Start:
19613442
End:
19617893
Strand:
+
Ref_name:
OSA-LNCN4568
Sequence
(OSA-LNCN4568.1):
UUCUGACUUUGUUGCAUGAAUGUGCAAAGUUCUAGCAUCAAAGGGGCUUUCAAUGUUUCAAUUCAAGAUAAACACAAUUUCCCUUUUUAUAAAAGAAAAAAAAAGGCUACUAUAACUUUUGUUUCUUCUCAUGAGGUGAUCCUGAAGUUUAAUACUCCUGCUGUGUAUCCUACUGCUGUUGAUUUAUGUUUUUGUUGCAUAUUAGACUAUACAAGUAUCUCUGAAACACACAAGUAAAAACUAGCGAGGAACAGGUCGCUGAUCAUGUUUAUUCAGUACUGUAUCAAGUAGGGAAGAUAGCAUAAUGUAAUAUGGAAAGGUGAAGUGAACAGGAUAAAUGCAGUGAAAUAAUUAUACUUCUUCCAUUCAUUUCUUUAUCACAAUACUUGAAAAGAAGCUUUCCACCUUGCUGGGCAAAAGUUAAUGAUGGAAUAUCCACUGCCCUCAUACAAUUUCUGAAAAAAGGGUCACUAUGCGCUGAAUGAUACAAUCAGUUCGCUGGUACUAAUAACAAAAGGCUCCUAGUCUGCAUCUUUUGCAUUUUGGGCAUUUAUUCUGAACCAGCACUGCGUGAAACUGAGUGUUUCUCGGAAUGUCGCAAACCUGCUAAAAUUUGAUGCUUCACAUGUAUGUUAAUAAAUUCAACAGACAAACUUUACGAUCGAAUCUGUUGACUGCCAAUUUAUUCAUUUUGUUGUCAAAUGAAGACAAGCCACAAUUGCUGCCUGUGAUUAAUUAGUAGAAAUAUGUUUGUGCUUUCACCCAAGGUCCUUGGGUCCUAGAUUGCUUCAUAUAUUCGGGACUGUAUUGUAAGCAAAGUCAGAUACAGUUCUCUCAUAGAACAAUUUGACAAGGGCACAACACACGCGUUUAAGGGACCUAUUAAGGGCAGGCACUGGAGCAGAAAGGAGGGAUCUUUGGUCGGCAAUGGCCGUAUGGGCAUGGUGUUUGAGACGCGGAAGGCACUACUGUGUAUGAAGGCAACUGGCCAUGUAGAGUUUCAGUUAAGGCACUUCGUUUCUUGCACAACUGGGGAUUGUGGCCAACCAGGGACCUGCCAAUAUGAACUGACACCGAAAGGCUUAAGGGCAAGGAAAUGCUCAACUGGAGGAGAUUAUUGUUGCUAACUAGUCAUCGUUCGAACUUAAACAGAAUAAUGAUAACACAAGCAUAAUUAUCAGUAGAUGAUGGUAUCGCAUCAUUGGAUAUGAACAACGGGGAGGGGAGUUUUAAUUUCUUUUUGUGUGUUCCUAUCAAAAAAAUUGGUUUUGCUGAGCUCUCUUGCUUCGAUUUUGCCCCAUCAAAUCGAUUUCAAGCCAGGCCCCGGUUUUUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.59%
ME_num:
MEP:
82.52%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.63
Avg Expression:
4.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.02330753831693 | 1.58889044864044e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.31651039151986 | 3.16602398793901e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.03971725382948 | 2.24084399151141e-12 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.87269600797025 | 0.00917252444910232 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.38233807739396 | 0.0309467206392732 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.58560262330206 | 0.000135251381829988 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.17485072954416 | 7.27667181991913e-07 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.1348125127452 | 0.0297873333255183 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.00079820069653 | 0.0242665093594544 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.32887864296704 | 1.13522250566839e-05 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.07006092480398 | 0.0387996161852399 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.43082591235174 | 0.0223318821477368 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.21243590648389 | 0.000144533567547722 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.05170032927028 | 0.0382382952357748 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.12677436305213 | 2.81499774936199e-05 |