Chr:
Chr4
Start:
18880467
End:
18881471
Strand:
.
Ref_name:
OSA-LNCN4555
Sequence
(OSA-LNCN4555.1):
GAGAGAAGGACAUUUAUACCCUUGGUGGUUAUUGUAUUUUUGCCCCAAUUUUUUUUCAGCCAUGUGAUUUUGCCCCUAUUAGGUGAUUUUAGCUUGUAUGAUUGUUAUAAAUAAUUCAAAUAUAAGCAUCUCUUGUGAUGUUUUUGUACUUUAACUAAACAAAAUCACAAAUACUAGCCAAUUACAAAAUUUGAUUAACAUAUCGACAGCAUUUCGACAACAUCUACAAAAUUUGCCCAAAAUGCAUUGGGAGCGGCUGGCUUAGCGUAGAAGAGCCGCCGCCGCCGGCCCUCGACGCGGCUGCCGGCCCUCCCCGCCUCGCGCGCGCCCGCGGCCGCUGCCGCCGCCGGCCGUCGCCGCCUCGCGCACGCCCGCGGCAGCCGCCGCCUCCGCGUGCGCCCUCGGCCGCCGCCUCCGCGUGCGCCGCCUCCGCUCUCUGCCCUCGGCCGCAGCCUCCACGCGCGCUCUGCGUGCAGCCGCCGCCGCCGGCCGUCGCCGCCUCGCCCGCGCCCGGGGCAGCACCGCCUCCGGCGUGCGCCCGGCGGGCCGCCGCCUCCGCCUCGCCGCCGCCUCCGCGUGCGCCCGCCGCCGCCGUCUCACCCGCGUGCGCCCGCACGUGCCGCCACCCGGCCCGCCUCGCCCGACGCCGCCUCCGUGUGCGCCCGCGCCCGCCGCCGCCGUCGGCGCUAGGAUUUCGCGUGGAAGAGCCGAACGGAGGUGGAGACCGACGGACUGGGGUGGAGACUGACUCACAGGCCUUAUCCAUUCCUUUAGGGGUACAAAGGUAAUCUCAUAUUUUCUAAAACCUUUUUUUUAAUUUCCUUUCGUAUUUUUUUAACACAAAACAUGGGACCCACCAAACGGCUGUCACAAGUGAGGGUAAACGGUUGGUUCAGAUUCAAAAAGUGGGAGCAAAACUGCAAACCCUAAAAAAUAGGGGUAAAACAGCAAUUGGCUUUCAAAGUGAGGGCAUGUAUGUAAUUGUCCCCUAAAAUUUCGGUCCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.46%
ME_num:
MEP:
20.73%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
1.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.1421271715202 | 0.04506239502398 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.65661192020035 | 0.0220759046350819 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -5.28740964718432 | 0.00219472543102912 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.0750011391051 | 0.000175345650611936 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.14425910185573 | 0.035181730862344 |