Chr:
Chr4
Start:
18605632
End:
18606198
Strand:
+
Ref_name:
OSA-LNCN4550
Sequence
(OSA-LNCN4550.1):
CAGUUUUACAAUAAUAUACAAAAUAAUCCCCAGAACAUUUUUAACAUACAACUUGUAGGUCAUAUUUUUUGUAUCAGGACAACAUGCUUCUCAACGUGUAUCAUGGUGGCGUCUAGUGGAAUCACAAUCUUGCUGAGAGUAGUGAGCAAAGCAACCCCAUCAUUUCAGAUUGAACUUAUUUGACCAAAUAUCUCUAUCUGGUGCUUUUAAAUGAGCCUACAGAUGCUUACAAUUCAUCAAGGCAAGAAUGGAGAAACAUUAAUUUUCCUCUUAUUGUGCAUCAUUAAGGCCAUAAAAUACUCAUUGAUUUCAUCAUAUUUACCUUAACUUUCAUAUAUAGCCUCCUGACACUUCCGAUUGUUUAGCUUUCAGUAUAUCAAUUCUGAGUCUGUGAUCAAACUAUGAAUAUGUAUUAAAGCAAAGGUAAACAAUACGAUGACUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.24%
ME_num:
MEP:
42.07%
HE_num:
HEP:
30.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.83
Avg Expression:
13.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.46870208078485 | 0.0420149240053464 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.30139763416251 | 0.00473524585228804 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -2.64052981545934 | 0.00177895221595817 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 2.57591661127871 | 9.94495792821639e-11 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.22911241699575 | 0.00520578345565208 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.30219544999072 | 0.00177730479356157 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.17405311953232 | 4.43785397191985e-61 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.17513076917464 | 0.0479288039527393 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.39739458232437 | 1.87571856709915e-05 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.65055524446785 | 0.0016585090438965 |