Chr:
Chr4
Start:
18594765
End:
18595967
Strand:
+
Ref_name:
OSA-LNCN4549
Sequence
(OSA-LNCN4549.1):
GAGGGAAGAAGGCAGUACCAUGUACUCAGCGGUGAUGAAGGAGUCGUUGAUGGCGACCAACUCGACAUCCUCACUCUGCAACGCCGAUGCUUGCCGAACCCUGCAGCAUCCAAACCAAAAGCCGUAUCACAAAUCCACGCCCAAUCCACAUAACAAGAACAAAACCAGAUCCAAUCGUAUGCUCACGAACACUCACCAAUAAUGCCGAUCUUAAAAAACAACAAUCACAAACCAAUCAGCCAAAAACACCAGACAAAACAAAUCAAAUCAACGACACGCACGUAAUAGCUUAUUUAGGCGGAAUAGUUUCUAUUCAACCUAAUGUCUAACCUAAAAUUUGAUCAAUUUGAAAUUUAUUUAUGGACAUCAACAUAACCGAUAUGGUCCCUGAUCAUAUGAACGGAAUUAUUACAAAUUAUGGUAGUAAAAAUGAUGGCUUGGUACAGACAAACACUCUUUUCAUGACAUAGCCAAUGGUGAAUCAUCUCAAUUUUCACUAAACCGGCAAACAUAAAACUAUCUGACACAAAACAAUGGGCCACCUAGGCGCCAUCUCCUUCCUUCUCGGGCCACUACAUUGCCGGAUCCAACGAUUUUAUUACCUUGGCUUCGAGGGAUGAGGAGGAGGAUGGCGACGGCUGCACGAACUGCUCCAUCCAAGCUUUGCACCUUCGUGGCCAGCGUCGACCUGCUCCACCCGAGGCCGCCCCUUCCAUGGUCGGGGGACACGGAUUUGACCACCCCCCGCCAGAUCCGGCAAUGCGGCGAUGGCGGUGACCGAACCGGAGCGCAACGGAGGUGGAGGCGGCGACGGGGACGCAAUGGAUGUGACGGCGGAGACGGAGAUGACGACGGCGACGGCGCGACAUGGAGGCGGAGACGUCGGCGCACGGCGGAGGCGGAGAUGACGACGGCGGCGGCGCGAGGCGGAGGCGGGGACGGCGGCGCGGAGCGGUGGCGGUGGGAGAGGGACAGGGAGGAGAGGGCGUGAGCGGCGGAGGCGGCUAGGGUUGGGGGAGGCGUUCGGGGACGCCGAUGCGACGACGGCGGCAGCGGCGGCGCGAGCGGAAGGCGGAUGCGGCGGCGUGAGCGGGAGGCGGAGACGGCGCAAGGCGGAGGCGGCGGAAGAGAGAGAGAGAGGGGGAGGGAGAGACGAGAGGGAGAAGGGU
Sequence
(OSA-LNCN4549.2):
GGCGCCAUCUCCUUCCUUCUCGGGCCACUACAUUGCCGGAUCCAACGAUUUUAUUACCUUGGCUUCGAGGGAUGAGGAGGAGGAUGGCGACGGCUGCACGAACUGCUCCAUCCAAGCUUUGCACCUUCGUGGCCAGCGUCGACCUGCUCCACCCGAGGCCGCCCCUUCCAUGGUCGGGGGACACGGAUUUGACCACCCCCCGCCAGAUCCGGCAAUGCGGCGAUGGCGGUGACCGAACCGGAGCGCAACGGAGGUGGAGGCGGCGACGGGGACGCAAUGGAUGUGACGGCGGAGGUGGAGAUGACGACGACGGCGGCGCGACGCGCAGACGGAGAUGACGACGGCGACGGCGCGACAUGGAGGCGGAGAUGACGACGGCGGCGGCGCGAGGCGGAGGCGGGGACGGCGGCGCGGAGCGGUGGCGGUGGGAGAGGGACAGGGAGGAGAGGGCGUGAGCGGCGGAGGCGGCUAGGGUUGGGGGAGGCGUUCGGGGACGCCGAUGCGACGACGGCGGCAGCGGCGGCGCGAGCGGAAGGCGGAUGCGGCGGCGUGAGCGGGAGGCGGAGACGGCGCAAGGCGGAGGCGGCGGAAGAGAGAGAGAGAGGGGGAGGGAGAGACGAGAGGGAGAAGGGU
Sequence
(OSA-LNCN4549.3):
CCCCGCCAGAUCCGGCAAUGCGGCGAUGGCGGUGACCGAACCGGAGCGCAACGGAGGUGGAGGCGGCGACGGGGACGCAAUGGAUGUGACGGCGGAGGCGGAGAUGACGACGGCGGCGGCGCGAGGCGGAGGCGGGGACGGCGGCGCGGAGCGGUGGCGGUGGGAGAGGGACAGGGAGGAGAGGGCGUGAGCGGCGGAGGCGGCUAGGGUUGGGGGAGGCGUUCGGGGACGCCGAUGCGACGACGGCGGCAGCGGCGGCGCGAGCGGAAGGCGGAUGCGGCGGCGUGAGCGGGAGGCGGAGACGGCGCAAGGCGGAGGCGGCGGAAGAGAGAGAGAGAGGGGGAGGGAGAGACGAGAGGGAGAAGGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.93%
ME_num:
MEP:
53.25%
HE_num:
HEP:
25.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.73
Avg Expression:
14.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.04368095494091 | 0.00838332742599071 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.61269107949073 | 9.55614493374755e-06 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.26058260901768 | 0.0142897858604958 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.7012106441457 | 7.75181692703756e-07 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.14860688640879 | 0.0104064586420394 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.28501732590327 | 0.0145963252441781 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.10201918812396 | 0.00214313911059673 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.77405812997238 | 2.84640597955299e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.30952004957259 | 1.23139917381466e-05 |